Factsheet for PGSC0003DMT400049448

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g086380.1.1	Tomato	nucleus	76.27	75.83
PGSC0003DMT400049445	Potato	cytosol	62.35	75.53
PGSC0003DMT400040589	Potato	nucleus	48.82	42.35
PGSC0003DMT400052191	Potato	cytosol	27.65	37.6
PGSC0003DMT400057265	Potato	nucleus, plastid	23.92	28.31
PGSC0003DMT400030652	Potato	cytosol	22.16	27.49
PGSC0003DMT400023877	Potato	cytosol	21.37	26.46
PGSC0003DMT400011839	Potato	cytosol	24.12	26.28
PGSC0003DMT400058477	Potato	cytosol	24.31	26.27
PGSC0003DMT400087504	Potato	nucleus	23.73	24.9
PGSC0003DMT400039455	Potato	cytosol	23.73	22.7
PGSC0003DMT400007879	Potato	plastid	26.47	19.88
PGSC0003DMT400038574	Potato	cytosol	23.73	19.8
PGSC0003DMT400043358	Potato	cytosol	25.88	15.98

Protein Annotations

EntrezGene:102604625	MapMan:11.6.2.2	MapMan:15.5.12	MapMan:26.6.2.1	GO:GO:0000989	GO:GO:0003674
GO:GO:0003712	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005202	UniProt:M1BNS1	PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400019212	PGSC:PGSC0003DMG400019212	EnsemblPlants:PGSC0003DMT400049448
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF47	InterPro:TF_DELLA	InterPro:TF_GRAS	UniParc:UPI000296A000
RefSeq:XP_015165084.1	SEG:seg	:	:	:	:

Description

DELLA protein GAI [Source:PGSC_GENE;Acc:PGSC0003DMG400019212]

Coordinates

chr10:-:51403425..51405587

Molecular Weight (calculated)

57311.5 Da

IEP (calculated)

5.304

GRAVY (calculated)

-0.275

Length

510 amino acids

Sequence
(BLAST)

001: MSSREISMDT IMEDEDSFGS NTNAIIYAAS DMSGWTHSLI SDNNIPNSSS STSVNVHHQQ HQISTAAGDD DDSMFVSSSA SSSWFNNNKQ IDDHQEIRIF
101: NVDFRALCNN TSGGSEFRGH LLPDTGRTLN EETSIRLVNA LMACAEAIQE NNLTLADVLN SQLRRFTIGG TMKKVATYFA GALYHKIHRL NPRDIVESFY
201: STDQLLHMSF YESCPLLKFA HFSANQSILE AFADSKRVHV IDFSLNQGLQ WPALLQALAL RPGGPPAFRL SGISGQPKFH EGSDPLREVG FKLAQFAESI
301: RVEFEFCGFM VHTLADLEAP MLNIRPSNVE TVAVNSVFEL HRLFSIPGAF EEVLDLIKQI QPKIVTIAEQ EANHNGSCYM NRIKEAWLYY STMFYVLENS
401: ESTQTNNRDL DMAEQYLGRE VYNLVACEGT KQIVRHETLS QWRVRFNSAG FNLVPLGSNT YRNANMLLAL FTNEEGYRVE EKDGCLMLSC HSRPLFTTSA
501: WCGYVAKSRD

Best Arabidopsis Sequence Match ( AT1G14920.1 )
(BLAST)

001: MKRDHHHHHH QDKKTMMMNE EDDGNGMDEL LAVLGYKVRS SEMADVAQKL EQLEVMMSNV QEDDLSQLAT ETVHYNPAEL YTWLDSMLTD LNPPSSNAEY
101: DLKAIPGDAI LNQFAIDSAS SSNQGGGGDT YTTNKRLKCS NGVVETTTAT AESTRHVVLV DSQENGVRLV HALLACAEAV QKENLTVAEA LVKQIGFLAV
201: SQIGAMRKVA TYFAEALARR IYRLSPSQSP IDHSLSDTLQ MHFYETCPYL KFAHFTANQA ILEAFQGKKR VHVIDFSMSQ GLQWPALMQA LALRPGGPPV
301: FRLTGIGPPA PDNFDYLHEV GCKLAHLAEA IHVEFEYRGF VANTLADLDA SMLELRPSEI ESVAVNSVFE LHKLLGRPGA IDKVLGVVNQ IKPEIFTVVE
401: QESNHNSPIF LDRFTESLHY YSTLFDSLEG VPSGQDKVMS EVYLGKQICN VVACDGPDRV ERHETLSQWR NRFGSAGFAA AHIGSNAFKQ ASMLLALFNG
501: GEGYRVEESD GCLMLGWHTR PLIATSAWKL STN

Arabidopsis Description

GAIDELLA protein GAI [Source:UniProtKB/Swiss-Prot;Acc:Q9LQT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.