Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | CDX76383 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDX79137 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDX82924 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDY27446 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018848.1-P | Field mustard | cytosol | 97.52 | 98.41 |
| CDY45059 | Canola | cytosol | 60.81 | 88.82 |
| CDY03601 | Canola | cytosol | 89.19 | 88.2 |
| CDY68881 | Canola | cytosol | 47.52 | 86.48 |
| AT1G50420.1 | Thale cress | cytosol | 87.61 | 80.71 |
| PGSC0003DMT400011839 | Potato | cytosol | 68.47 | 64.96 |
| Solyc12g099900.1.1 | Tomato | nucleus | 68.24 | 64.74 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 68.92 | 64.56 |
| KRH29080 | Soybean | cytosol | 63.96 | 62.42 |
| PGSC0003DMT400058477 | Potato | cytosol | 65.99 | 62.08 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 62.39 | 60.88 |
| Solyc01g008910.2.1 | Tomato | cytosol | 64.86 | 60.5 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 62.39 | 59.57 |
| KRH27822 | Soybean | nucleus, plastid | 61.71 | 57.93 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 22.97 | 56.98 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 57.21 | 56.95 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 56.98 | 53.49 |
| Os01t0948200-00 | Rice | cytosol | 52.93 | 53.17 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 52.48 | 52.13 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 52.7 | 51.66 |
| Zm00001d042127_P001 | Maize | plastid | 51.58 | 51.23 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 52.48 | 51.21 |
| Zm00001d011881_P001 | Maize | cytosol | 50.68 | 50.11 |
| EES02045 | Sorghum | cytosol, plastid | 51.58 | 49.89 |
| CDY37137 | Canola | plastid | 96.17 | 44.76 |
| Os06t0211500-00 | Rice | cytosol | 18.24 | 42.41 |
| CDY50706 | Canola | cytosol, extracellular, plastid | 5.41 | 39.34 |
| CDY43123 | Canola | cytosol, extracellular, plastid | 5.41 | 39.34 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 27.03 | 38.1 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 27.03 | 38.1 |
| Os12t0138100-00 | Rice | cytosol | 41.22 | 37.2 |
| Os11t0141500-00 | Rice | cytosol | 40.99 | 36.99 |
| Zm00001d023248_P001 | Maize | cytosol | 41.89 | 36.76 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 25.68 | 36.31 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 11.94 | 36.3 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 25.45 | 35.99 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 25.0 | 35.58 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 42.79 | 34.55 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 42.57 | 34.24 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 33.11 | 34.19 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 42.57 | 34.05 |
| EES16518 | Sorghum | cytosol | 34.46 | 34.0 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 42.79 | 33.99 |
| KXG22822 | Sorghum | mitochondrion | 41.44 | 31.89 |
| EES09233 | Sorghum | cytosol | 34.46 | 31.42 |
| Os12t0138200-00 | Rice | cytosol | 35.14 | 30.59 |
| OQU77884 | Sorghum | plasma membrane | 31.31 | 30.55 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 32.66 | 30.53 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 30.63 | 30.49 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 30.63 | 30.49 |
| Os11t0141700-00 | Rice | cytosol | 34.46 | 30.24 |
| CDY50028 | Canola | nucleus, plastid | 28.38 | 30.22 |
| CDY54362 | Canola | plastid | 28.6 | 30.17 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 31.31 | 30.09 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 31.98 | 29.96 |
| Zm00001d052463_P001 | Maize | cytosol | 34.46 | 29.25 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 31.08 | 29.05 |
| CDY70426 | Canola | cytosol | 32.66 | 28.6 |
| TraesCSU01G014000.1 | Wheat | cytosol | 18.92 | 28.57 |
| CDY64484 | Canola | mitochondrion | 15.77 | 28.46 |
| CDY55037 | Canola | cytosol | 32.43 | 28.4 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 30.86 | 28.13 |
| OQU77885 | Sorghum | cytosol | 30.18 | 27.8 |
| CDY27670 | Canola | cytosol | 24.77 | 27.23 |
| CDY38434 | Canola | cytosol | 30.41 | 26.47 |
| CDY16915 | Canola | cytosol, nucleus, plastid | 30.63 | 25.9 |
| Zm00001d023247_P001 | Maize | plastid | 32.21 | 25.54 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 31.31 | 25.0 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 31.53 | 24.48 |
| CDY04092 | Canola | cytosol | 28.6 | 23.78 |
| Os05t0378200-00 | Rice | cytosol | 29.5 | 23.77 |
| CDY64837 | Canola | cytosol | 28.6 | 23.43 |
| GSMUA_Achr11P... | Banana | cytosol | 57.43 | 23.14 |
| CDX78219 | Canola | nucleus, plastid | 30.63 | 22.55 |
| Os05t0378500-00 | Rice | plastid | 27.7 | 21.96 |
| CDX73496 | Canola | nucleus, plastid | 30.63 | 21.86 |
| CDY70213 | Canola | plastid | 31.53 | 21.77 |
| CDY53846 | Canola | cytosol | 28.15 | 21.44 |
| CDY72338 | Canola | cytosol | 28.15 | 21.37 |
| CDY49199 | Canola | plastid | 30.41 | 21.36 |
| CDY45974 | Canola | plastid | 30.86 | 21.24 |
| CDY47352 | Canola | plastid | 29.95 | 20.88 |
| CDY43122 | Canola | nucleus | 15.77 | 16.79 |
| CDY50707 | Canola | cytosol, nucleus, plastid | 15.54 | 16.59 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 2.25 | 2.83 |
| Os11t0141550-01 | Rice | cytosol | 0.23 | 0.78 |
Protein Annotations
| MapMan:15.5.12 | GO:A0A078G8L9 | UniProt:A0A078G8L9 | EnsemblPlants:CDY22795 | ProteinID:CDY22795 | ProteinID:CDY22795.1 |
| GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00021137001 | InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF13 | InterPro:Scarecrow-like_3 | InterPro:TF_GRAS | UniParc:UPI0004EDC927 | : |
Description
BnaA06g02820DBnaA06g02820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8L9]
Coordinates
chrLK032136:-:117173..118676
Molecular Weight (calculated)
49991.1 Da
IEP (calculated)
6.441
GRAVY (calculated)
-0.207
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVAMLQEDN GTSSVASSPL QVFSTMSLTR PALLSSPSSP FKDLKPEERG LYLIHLLLTC ANHVASGNLQ NANAALEQLS LLSSPDGDTM QRVAAYFTEA
101: LANRILKSWP GLYKALNATQ RKTSNVSEEV HVRRLFFDMF PILKVSYLLT NRAILEAMEG EKMVHVIDLD ACEPAQWLAL IQDFNSRPEG PPHLRITCVH
201: RHKEVLDQMA HRLTEEAEKL DIPFQFNPVV SSVESLNIDQ LRVKTGEALA VSSVLQLHNF LASDDDILRK NGCSLSGDSA SSLPLPSSGR IDRFLNSMWS
301: LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTWQDRI KVEKMFFGEE IKNIIACEGS ERKERHEKLE KWSKRIDLAG FGNVPLSYFA
401: MLQGRRLLQG YGFDGYMIKE ESGCAVICWQ DRPLYSVSAW RCRK
101: LANRILKSWP GLYKALNATQ RKTSNVSEEV HVRRLFFDMF PILKVSYLLT NRAILEAMEG EKMVHVIDLD ACEPAQWLAL IQDFNSRPEG PPHLRITCVH
201: RHKEVLDQMA HRLTEEAEKL DIPFQFNPVV SSVESLNIDQ LRVKTGEALA VSSVLQLHNF LASDDDILRK NGCSLSGDSA SSLPLPSSGR IDRFLNSMWS
301: LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTWQDRI KVEKMFFGEE IKNIIACEGS ERKERHEKLE KWSKRIDLAG FGNVPLSYFA
401: MLQGRRLLQG YGFDGYMIKE ESGCAVICWQ DRPLYSVSAW RCRK
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.