Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 98.03 | 98.74 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 97.5 | 98.73 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 90.88 | 92.36 |
| Os12t0138100-00 | Rice | cytosol | 69.95 | 79.47 |
| Os11t0141500-00 | Rice | cytosol | 69.95 | 79.47 |
| Zm00001d023248_P001 | Maize | cytosol | 65.65 | 72.53 |
| KXG22822 | Sorghum | mitochondrion | 67.08 | 64.99 |
| CDY68881 | Canola | cytosol | 22.18 | 50.82 |
| CDY45059 | Canola | cytosol | 27.37 | 50.33 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 36.49 | 45.74 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 36.31 | 44.62 |
| Bra018848.1-P | Field mustard | cytosol | 34.35 | 43.64 |
| Bra014251.1-P | Field mustard | cytosol | 34.7 | 43.6 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 36.49 | 43.13 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 36.85 | 43.1 |
| CDY22795 | Canola | cytosol, plastid | 33.99 | 42.79 |
| CDY03601 | Canola | cytosol | 34.35 | 42.76 |
| Solyc12g099900.1.1 | Tomato | nucleus | 35.78 | 42.73 |
| KRH29080 | Soybean | cytosol | 34.7 | 42.64 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 34.7 | 42.64 |
| PGSC0003DMT400011839 | Potato | cytosol | 35.42 | 42.31 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 35.42 | 41.77 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 34.7 | 41.72 |
| KRH27822 | Soybean | nucleus, plastid | 34.7 | 41.01 |
| AT1G50420.1 | Thale cress | cytosol | 35.24 | 40.87 |
| PGSC0003DMT400058477 | Potato | cytosol | 34.17 | 40.47 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 22.54 | 40.13 |
| Solyc01g008910.2.1 | Tomato | cytosol | 33.81 | 39.71 |
| Os12t0138200-00 | Rice | cytosol | 35.78 | 39.22 |
| KRH29971 | Soybean | cytosol | 30.95 | 39.14 |
| Os11t0141700-00 | Rice | cytosol | 35.42 | 39.13 |
| KRH62871 | Soybean | cytosol | 30.95 | 39.05 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 21.47 | 38.22 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 21.11 | 37.82 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 30.41 | 35.79 |
| TraesCS6D01G153000.1 | Wheat | cytosol | 19.68 | 27.85 |
| TraesCS4D01G338800.1 | Wheat | cytoskeleton, cytosol, peroxisome, plastid | 23.79 | 27.2 |
| TraesCS2D01G208500.1 | Wheat | cytosol | 21.82 | 27.17 |
| TraesCS1D01G303500.1 | Wheat | peroxisome | 22.9 | 26.23 |
| TraesCS3D01G220100.3 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 25.04 | 26.07 |
| TraesCS7D01G379200.1 | Wheat | cytosol | 19.5 | 25.65 |
| TraesCS1D01G421200.1 | Wheat | cytosol | 23.26 | 25.59 |
| TraesCS3D01G385500.1 | Wheat | cytosol | 23.43 | 25.24 |
| TraesCS3D01G385400.1 | Wheat | cytosol | 22.9 | 24.76 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 24.69 | 22.15 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 19.14 | 22.11 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 21.47 | 21.82 |
| TraesCS7D01G053600.1 | Wheat | plastid | 23.79 | 21.21 |
| TraesCS5D01G148000.1 | Wheat | plastid | 23.61 | 20.21 |
| CDY37137 | Canola | plastid | 33.81 | 19.81 |
| TraesCS2D01G095300.1 | Wheat | nucleus | 24.87 | 19.44 |
| TraesCS4D01G122000.1 | Wheat | plastid | 23.61 | 19.44 |
| GSMUA_Achr11P... | Banana | cytosol | 34.17 | 17.33 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 3.76 | 5.95 |
| Os11t0141550-01 | Rice | cytosol | 0.72 | 3.1 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G139500.1 | EnsemblPlantsGene:TraesCS5D01G139500 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF32 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr5D:-:222434452..222436236
Molecular Weight (calculated)
61462.2 Da
IEP (calculated)
8.073
GRAVY (calculated)
-0.314
Length
559 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTKMALRVP QMRPALERPE VPQETSSPHR KGVEPRSWGG IASIMFQQQQ PPPQPQPQPQ RQQQQEDVMS SATSSPASTL YSPTPYAFAG TSVQELSSDQ
101: CSVRLISLLY QCASEVAAGE FDRANLCLEH IMQLASLDAP HTLQRLAAVF ADALACKLLK LLPGLSRALL SSSSSDDAHL VPAARRHMFD MLPFLKLAYL
201: TTNHAILEAM EGERFVHVVD LSGPAANPAQ WIALFHAFRG RRDGTPNLRI TAVHESKEFL AGMSAVLVRE AEAFDIPFQF NAVEARLEDM DFDALRHNLR
301: VRSGEALAVS VALQLHRLLA ADDTGGKRQG GLTPLQIIAR SSPSSFGELL ERELNTRLQL SPDASAFSSM SPQSPIGGHF PAGGQQRPKI GSFLSAVKAL
401: SPKIMVVTEQ EANHNGAAFH ERFDEALNYY ASLFDCLERA AAAQRGSAAA ERARVERSVL GEEIRSIVAC EGGERKERHE RARQWAGRME AAGMERVGLS
501: YSGAMEARKL LQRSGWGGYE VRHDAEGHCF FLCWHKKPLY AVTAWRPAGY HHSGGARSR
101: CSVRLISLLY QCASEVAAGE FDRANLCLEH IMQLASLDAP HTLQRLAAVF ADALACKLLK LLPGLSRALL SSSSSDDAHL VPAARRHMFD MLPFLKLAYL
201: TTNHAILEAM EGERFVHVVD LSGPAANPAQ WIALFHAFRG RRDGTPNLRI TAVHESKEFL AGMSAVLVRE AEAFDIPFQF NAVEARLEDM DFDALRHNLR
301: VRSGEALAVS VALQLHRLLA ADDTGGKRQG GLTPLQIIAR SSPSSFGELL ERELNTRLQL SPDASAFSSM SPQSPIGGHF PAGGQQRPKI GSFLSAVKAL
401: SPKIMVVTEQ EANHNGAAFH ERFDEALNYY ASLFDCLERA AAAQRGSAAA ERARVERSVL GEEIRSIVAC EGGERKERHE RARQWAGRME AAGMERVGLS
501: YSGAMEARKL LQRSGWGGYE VRHDAEGHCF FLCWHKKPLY AVTAWRPAGY HHSGGARSR
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.