Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0662600-02 | |
| Os05t0568100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | Os01t0662600-02 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | Os05t0568100-01 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0141700-00 | Rice | cytosol | 92.35 | 93.08 |
| CDY45059 | Canola | cytosol | 25.69 | 43.09 |
| Os12t0138100-00 | Rice | cytosol | 41.18 | 42.68 |
| Os11t0141500-00 | Rice | cytosol | 41.18 | 42.68 |
| CDY68881 | Canola | cytosol | 20.2 | 42.21 |
| Zm00001d023248_P001 | Maize | cytosol | 39.41 | 39.72 |
| Os01t0948200-00 | Rice | cytosol | 32.94 | 38.01 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 32.94 | 37.67 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 39.41 | 36.55 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 39.22 | 36.23 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 39.41 | 36.22 |
| KRH29080 | Soybean | cytosol | 31.96 | 35.82 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 39.22 | 35.78 |
| Bra018848.1-P | Field mustard | cytosol | 30.78 | 35.68 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 31.57 | 35.38 |
| Bra014251.1-P | Field mustard | cytosol | 30.78 | 35.28 |
| CDY22795 | Canola | cytosol, plastid | 30.59 | 35.14 |
| Solyc12g099900.1.1 | Tomato | nucleus | 32.16 | 35.04 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 32.35 | 34.88 |
| KXG22822 | Sorghum | mitochondrion | 39.41 | 34.84 |
| CDY03601 | Canola | cytosol | 30.59 | 34.74 |
| PGSC0003DMT400011839 | Potato | cytosol | 31.57 | 34.4 |
| AT1G50420.1 | Thale cress | cytosol | 32.16 | 34.02 |
| Solyc01g008910.2.1 | Tomato | cytosol | 31.37 | 33.61 |
| PGSC0003DMT400058477 | Potato | cytosol | 30.98 | 33.47 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 30.98 | 33.33 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 30.2 | 33.12 |
| VIT_13s0019g01220.t01 | Wine grape | cytosol | 30.98 | 33.05 |
| Os06t0211500-00 | Rice | cytosol | 12.35 | 32.98 |
| KRH27822 | Soybean | nucleus, plastid | 30.0 | 32.35 |
| KRH62871 | Soybean | cytosol | 27.06 | 31.15 |
| KRH29971 | Soybean | cytosol | 26.67 | 30.77 |
| Os05t0378200-00 | Rice | cytosol | 27.84 | 25.77 |
| Os01t0646300-01 | Rice | cytosol | 24.71 | 25.45 |
| Os07t0567700-02 | Rice | cytosol | 21.57 | 24.07 |
| Os06t0610350-01 | Rice | cytosol | 20.78 | 24.04 |
| Os05t0574900-01 | Rice | plasma membrane | 23.33 | 23.8 |
| Os02t0197300-00 | Rice | cytosol | 20.59 | 23.54 |
| Os05t0485400-00 | Rice | peroxisome | 20.78 | 21.2 |
| Os03t0707600-01 | Rice | nucleus | 25.29 | 20.64 |
| Os06t0127800-01 | Rice | plastid | 23.92 | 19.77 |
| Os03t0723000-01 | Rice | nucleus | 21.96 | 19.38 |
| Os05t0378500-00 | Rice | plastid | 21.18 | 19.29 |
| Os11t0124300-01 | Rice | nucleus, plastid | 24.31 | 19.05 |
| Os12t0122000-01 | Rice | plastid | 24.51 | 18.94 |
| Os04t0432100-00 | Rice | nucleus | 18.43 | 18.65 |
| CDY37137 | Canola | plastid | 30.98 | 16.56 |
| GSMUA_Achr11P... | Banana | cytosol | 30.59 | 14.16 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 1.37 | 1.98 |
| Os11t0141550-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os12t0138200-00 | EnsemblPlantsGene:Os12g0138200 | EntrezGene:107275472 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF21 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:BAT15818.1 | RefSeq:XP_015619131.1 |
| SEG:seg | UniParc:UPI0003939AFA | UniProt:A0A0N7KTJ8 | MapMan:15.5.12 | : | : |
Description
Similar to GRAS family transcription factor containing protein. (Os12t0138200-00)
Coordinates
chr12:-:1859797..1861329
Molecular Weight (calculated)
55529.9 Da
IEP (calculated)
5.743
GRAVY (calculated)
-0.215
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSGTDSSSP ELSLCSPYEP WTQGRGPTEE MGLALLECAA HVETGPMEKA TRCLARATGL AAAAAAGDGP QKRLAEAMVD CLARRLLRPV QAITDALIDP
101: SVYLDRRSVR AARRGFFELS PFPKVAFVVG NRAIVEAVEN ESLVHVVGMS GPFTQPCQWI QLLHELRRRP EGPPRVVRLT VVHDDGELLA KMAEVLSDEA
201: EELDMEFQFH GVVGQLEDLD FSNLRDVLEI KSGEALVVSC TLQLHRLLAA DDDAMYSSRS AHLNQMASIA QLQQMAVSSC PPSTGGGGSV QYKDDDDDPY
301: RSPATPLTFV SPPASTPHLQ MPAALANFLS AVRALSPKIV VVAEQDADHN GVSFRKRFCE ALHHYAAVFD SLDDAAAATT SAASHLWSPD ERAQVERVVV
401: GEEIKGVLLR DGAHRRERHD RLRQWAARME MAGFTGVPLS YAAIRKGNDM VRRCGLRRCE NRECGGCLLL CWSSRPLYSI SAWRPAASGG AGSGSERSEY
501: IHVGAEADDR
101: SVYLDRRSVR AARRGFFELS PFPKVAFVVG NRAIVEAVEN ESLVHVVGMS GPFTQPCQWI QLLHELRRRP EGPPRVVRLT VVHDDGELLA KMAEVLSDEA
201: EELDMEFQFH GVVGQLEDLD FSNLRDVLEI KSGEALVVSC TLQLHRLLAA DDDAMYSSRS AHLNQMASIA QLQQMAVSSC PPSTGGGGSV QYKDDDDDPY
301: RSPATPLTFV SPPASTPHLQ MPAALANFLS AVRALSPKIV VVAEQDADHN GVSFRKRFCE ALHHYAAVFD SLDDAAAATT SAASHLWSPD ERAQVERVVV
401: GEEIKGVLLR DGAHRRERHD RLRQWAARME MAGFTGVPLS YAAIRKGNDM VRRCGLRRCE NRECGGCLLL CWSSRPLYSI SAWRPAASGG AGSGSERSEY
501: IHVGAEADDR
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.