Factsheet for Os12t0138166-00

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0662600-02
Os05t0568100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50420.1	Os01t0662600-02	AT4G22220.1	21798944
AT1G50420.1	Os05t0568100-01	AT4G22220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22822	Sorghum	mitochondrion	8.5	5.2
Os03t0707600-01	Rice	nucleus	7.65	4.32
TraesCS5D01G139500.1	Wheat	mitochondrion	5.95	3.76
Os06t0127800-01	Rice	plastid	6.52	3.73
TraesCS5B01G133800.1	Wheat	mitochondrion	5.67	3.62
TraesCS5A01G135000.1	Wheat	mitochondrion	5.67	3.6
Os12t0122000-01	Rice	plastid	6.23	3.33
Os11t0141550-01	Rice	cytosol	1.13	3.1
HORVU5Hr1G043310.1	Barley	cytosol	4.82	3.09
Os11t0124300-01	Rice	nucleus, plastid	5.67	3.07
Os03t0723000-01	Rice	nucleus	4.82	2.94
Os05t0378500-00	Rice	plastid	4.53	2.86
Os12t0138100-00	Rice	cytosol	3.68	2.64
Os11t0141500-00	Rice	cytosol	3.68	2.64
Bra018848.1-P	Field mustard	cytosol	3.12	2.5
Bra014251.1-P	Field mustard	cytosol	3.12	2.47
CDY03601	Canola	cytosol	3.12	2.45
CDY22795	Canola	cytosol, plastid	2.83	2.25
AT1G50420.1	Thale cress	cytosol	2.83	2.07
Solyc12g099900.1.1	Tomato	nucleus	2.55	1.92
Os01t0948200-00	Rice	cytosol	2.27	1.81
Os05t0485400-00	Rice	peroxisome	2.55	1.8
GSMUA_Achr8P09690_001	Banana	cytosol	2.27	1.79
Zm00001d023248_P001	Maize	cytosol	2.55	1.78
Os07t0567700-02	Rice	cytosol	2.27	1.75
PGSC0003DMT400011839	Potato	cytosol	2.27	1.71
Os01t0646300-01	Rice	cytosol	2.27	1.62
PGSC0003DMT400058477	Potato	cytosol	1.98	1.48
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	1.98	1.48
Solyc01g008910.2.1	Tomato	cytosol	1.98	1.47
VIT_13s0019g01220.t01	Wine grape	cytosol	1.98	1.46
Os12t0138200-00	Rice	cytosol	1.98	1.37
KRH77666	Soybean	endoplasmic reticulum, nucleus, peroxisome, plastid	1.7	1.29
Os05t0378200-00	Rice	cytosol	1.98	1.27
KRH27822	Soybean	nucleus, plastid	1.7	1.27
VIT_06s0009g02390.t01	Wine grape	cytosol	1.7	1.27
Os04t0432100-00	Rice	nucleus	1.7	1.19
Os11t0141700-00	Rice	cytosol	1.7	1.19
CDY37137	Canola	plastid	3.12	1.15
Os06t0610350-01	Rice	cytosol	1.42	1.13
KRH29971	Soybean	cytosol	1.42	1.13
KRH62871	Soybean	cytosol	1.42	1.13
GSMUA_Achr11P...	Banana	cytosol	3.12	1.0
Os02t0197300-00	Rice	cytosol	1.13	0.9
KRH29080	Soybean	cytosol	1.13	0.88
Os05t0574900-01	Rice	plasma membrane	1.13	0.8
KRH24106	Soybean	cytosol, nucleus, peroxisome	0.85	0.66
CDY68881	Canola	cytosol	0.28	0.41
CDY45059	Canola	cytosol	0.28	0.33
Os06t0211500-00	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.12	UniProt:A0A0P0Y6V0	ProteinID:BAT15817.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EnsemblPlantsGene:Os12g0138166	EnsemblPlants:Os12t0138166-00	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF133	InterPro:TF_GRAS	UniParc:UPI0003939181	SEG:seg

Description

Similar to GRAS family transcription factor containing protein. (Os12t0138166-00)

Coordinates

chr12:-:1856119..1857180

Molecular Weight (calculated)

40256.6 Da

IEP (calculated)

6.978

GRAVY (calculated)

-0.124

Length

353 amino acids

Sequence
(BLAST)

001: EFEIICTLAC NLLTQVELQV VHIVDLSCSA AHPWQWLKLL DDFHGRPGGA PELYLTVLHD DNDFLAEMQS LLSKKAESLE VSFRFISVIG RLETLDFSNL
101: RSTFQIKFGV AVAISCALQM HRLLLVDDNL SSTSIAQLQK MANFTQPKQM ASSVCSPAST LNYLQTPSPR TPKLLARLLS AIRALKPNIM VIMEQDADHN
201: ALLFRDRFNE VLNYYAALFD CFHAVAAANP GRTDERLRVE RMILREEIKN ILVCEGVHRH ERHERLDQWA MHMEESGFHN VQLSFSAIRE GKENLLSFGL
301: KNCQNKEDRG CLLLSWGSTN LYSISVWRQN RGSSSGSREH MLLVQRQIIW PFQ

Best Arabidopsis Sequence Match ( AT1G50420.1 )
(BLAST)

001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK

Arabidopsis Description

SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.