Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | KRH03283 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | KRH19966 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | KRH54391 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | KRH57077 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 96.26 | 96.26 |
| CDY68881 | Canola | cytosol | 39.12 | 72.95 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 73.85 | 72.26 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 74.73 | 71.73 |
| CDY45059 | Canola | cytosol | 47.69 | 71.38 |
| PGSC0003DMT400011839 | Potato | cytosol | 72.97 | 70.94 |
| Solyc12g099900.1.1 | Tomato | nucleus | 72.97 | 70.94 |
| KRH27822 | Soybean | nucleus, plastid | 72.31 | 69.56 |
| PGSC0003DMT400058477 | Potato | cytosol | 71.87 | 69.28 |
| Solyc01g008910.2.1 | Tomato | cytosol | 70.99 | 67.86 |
| Bra018848.1-P | Field mustard | cytosol | 62.86 | 65.0 |
| Bra014251.1-P | Field mustard | cytosol | 63.3 | 64.72 |
| CDY22795 | Canola | cytosol, plastid | 62.42 | 63.96 |
| CDY03601 | Canola | cytosol | 62.64 | 63.47 |
| AT1G50420.1 | Thale cress | cytosol | 66.37 | 62.66 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 58.24 | 59.42 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 23.08 | 58.66 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 60.22 | 57.93 |
| KRH29971 | Soybean | cytosol | 54.29 | 55.88 |
| KRH62871 | Soybean | cytosol | 53.63 | 55.08 |
| Os01t0948200-00 | Rice | cytosol | 50.33 | 51.81 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 50.11 | 51.01 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 50.55 | 50.55 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 50.11 | 50.33 |
| Zm00001d042127_P001 | Maize | plastid | 48.57 | 49.44 |
| Zm00001d011881_P001 | Maize | cytosol | 47.91 | 48.55 |
| EES02045 | Sorghum | cytosol, plastid | 48.79 | 48.37 |
| Os06t0211500-00 | Rice | cytosol | 18.02 | 42.93 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 26.59 | 38.41 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 26.59 | 38.41 |
| Os12t0138100-00 | Rice | cytosol | 41.1 | 38.01 |
| Os11t0141500-00 | Rice | cytosol | 40.88 | 37.8 |
| Zm00001d023248_P001 | Maize | cytosol | 41.76 | 37.55 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 25.71 | 37.26 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 25.49 | 36.94 |
| EES16518 | Sorghum | cytosol | 35.38 | 35.78 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 42.86 | 35.33 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 42.42 | 35.09 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 42.64 | 34.95 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 11.21 | 34.93 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 42.64 | 34.7 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 32.53 | 34.42 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 23.52 | 34.29 |
| KXG22822 | Sorghum | mitochondrion | 41.32 | 32.58 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 31.87 | 32.51 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 31.87 | 32.51 |
| KRH29015 | Soybean | cytosol | 20.22 | 32.28 |
| Os11t0141700-00 | Rice | cytosol | 35.6 | 32.02 |
| Os12t0138200-00 | Rice | cytosol | 35.82 | 31.96 |
| KRG92263 | Soybean | cytosol | 27.91 | 31.83 |
| EES09233 | Sorghum | cytosol | 34.07 | 31.83 |
| Zm00001d052463_P001 | Maize | cytosol | 35.16 | 30.59 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 31.65 | 30.38 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 31.65 | 30.32 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 31.65 | 30.32 |
| OQU77884 | Sorghum | plasma membrane | 29.89 | 29.89 |
| CDY37137 | Canola | plastid | 62.42 | 29.77 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 29.45 | 29.0 |
| TraesCSU01G014000.1 | Wheat | cytosol | 18.68 | 28.91 |
| KRH34954 | Soybean | cytosol | 25.71 | 28.89 |
| KRH29089 | Soybean | mitochondrion | 27.47 | 28.28 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 30.11 | 28.13 |
| KRH24117 | Soybean | plastid | 26.59 | 27.19 |
| OQU77885 | Sorghum | cytosol | 28.79 | 27.18 |
| KRH63032 | Soybean | cytosol | 29.67 | 26.84 |
| KRH34544 | Soybean | cytosol | 28.35 | 26.43 |
| Zm00001d023247_P001 | Maize | plastid | 32.09 | 26.07 |
| KRH54840 | Soybean | cytosol | 28.79 | 25.94 |
| KRH42544 | Soybean | cytosol, nucleus, plastid | 29.23 | 25.73 |
| KRH57194 | Soybean | cytosol | 28.57 | 25.44 |
| KRH58636 | Soybean | nucleus | 29.23 | 25.43 |
| KRG91825 | Soybean | nucleus | 25.71 | 25.16 |
| KRH03910 | Soybean | cytosol | 28.35 | 25.1 |
| KRH70202 | Soybean | cytosol | 25.71 | 24.58 |
| KRH13057 | Soybean | cytosol | 29.45 | 24.14 |
| KRH08555 | Soybean | cytosol | 24.84 | 23.99 |
| Os05t0378200-00 | Rice | cytosol | 28.35 | 23.41 |
| KRG97933 | Soybean | nucleus | 29.89 | 23.29 |
| GSMUA_Achr11P... | Banana | cytosol | 55.38 | 22.87 |
| KRH30942 | Soybean | cytosol | 29.45 | 22.52 |
| Os05t0378500-00 | Rice | plastid | 27.47 | 22.32 |
| KRH19587 | Soybean | cytosol | 25.71 | 22.24 |
| KRG94590 | Soybean | plastid | 32.53 | 21.73 |
| KRH06900 | Soybean | plastid | 32.53 | 21.57 |
| KRH32212 | Soybean | cytosol | 25.27 | 21.42 |
| KRH24039 | Soybean | cytosol | 22.64 | 21.41 |
| KRH44884 | Soybean | cytosol | 20.22 | 21.25 |
| KRH03976 | Soybean | mitochondrion, nucleus | 28.57 | 19.43 |
| KRH57249 | Soybean | plastid | 28.13 | 19.28 |
| KRH40615 | Soybean | nucleus, plastid | 30.77 | 17.01 |
| KRH00551 | Soybean | nucleus, plastid | 30.55 | 16.51 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 0.88 | 1.13 |
| Os11t0141550-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100814131 | MapMan:15.5.12 | EMBL:ACUP02006778 | EnsemblPlantsGene:GLYMA_11G096000 | GO:GO:0000989 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009739 | GO:GO:0009987 |
| GO:GO:0043565 | UniProt:I1LIM7 | InterPro:IPR005202 | EnsemblPlants:KRH29080 | ProteinID:KRH29080 | ProteinID:KRH29080.1 |
| ProteinID:KRH29081.1 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF13 | InterPro:Scarecrow-like_3 |
| InterPro:TF_GRAS | UniParc:UPI00023CC912 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:7294150..7296623
Molecular Weight (calculated)
51457.3 Da
IEP (calculated)
5.823
GRAVY (calculated)
-0.141
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSLSPSLGS PNNLLFREMK SEERGLYLIH LLLTCANHVA AGNLENANTT LEQISLLASP DGDTMQRIAT YFMESLADRI LKTWPGIHRA LNSTRITLLS
101: DEILVQKLFF ELFPFLKVAF VLTNQAIIEA MEGEKVIHII DLNAAEAAQW IALLQVLSGR PEGPPHLRIT GVHQKKEILD QVAHRLTEEA EKLDIPFQFN
201: PVVSKLENLD FDKLRVKTGE ALAISSILQL HTLLAWDDET MQRKSPLLLK TSNGIHLQRV LPMGQSTLGD LVEKDMVNGY TLSPDSTSSS PASLTTSNSM
301: NMESFLNALW GLSPKVMVVT EQDCNHNGPT LMDRLLEALY SFAALFDCLE STVSRTSLER LRVEKMLFGE EIKNIIACEG SERKERHEKL EKWFQRFDLA
401: GFGNVPLSYF GMLQARRFLQ SYGCEGYRMR DENGCVLICW EDRPMYSISA WRSRK
101: DEILVQKLFF ELFPFLKVAF VLTNQAIIEA MEGEKVIHII DLNAAEAAQW IALLQVLSGR PEGPPHLRIT GVHQKKEILD QVAHRLTEEA EKLDIPFQFN
201: PVVSKLENLD FDKLRVKTGE ALAISSILQL HTLLAWDDET MQRKSPLLLK TSNGIHLQRV LPMGQSTLGD LVEKDMVNGY TLSPDSTSSS PASLTTSNSM
301: NMESFLNALW GLSPKVMVVT EQDCNHNGPT LMDRLLEALY SFAALFDCLE STVSRTSLER LRVEKMLFGE EIKNIIACEG SERKERHEKL EKWFQRFDLA
401: GFGNVPLSYF GMLQARRFLQ SYGCEGYRMR DENGCVLICW EDRPMYSISA WRSRK
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.