Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50420.1 | CDX76383 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDX79137 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDX82924 | AT4G22220.1 | 21798944 |
| AT1G50420.1 | CDY27446 | AT4G22220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68881 | Canola | cytosol | 74.01 | 92.21 |
| Bra014251.1-P | Field mustard | cytosol | 100.0 | 68.31 |
| CDY03601 | Canola | cytosol | 98.03 | 66.37 |
| HORVU3Hr1G106260.1 | Barley | cytosol | 35.86 | 60.89 |
| CDY22795 | Canola | cytosol, plastid | 88.82 | 60.81 |
| AT1G50420.1 | Thale cress | cytosol | 93.09 | 58.71 |
| VIT_06s0009g02390.t01 | Wine grape | cytosol | 75.99 | 48.73 |
| PGSC0003DMT400011839 | Potato | cytosol | 74.67 | 48.5 |
| Solyc12g099900.1.1 | Tomato | nucleus | 73.68 | 47.86 |
| KRH29080 | Soybean | cytosol | 71.38 | 47.69 |
| KRH24106 | Soybean | cytosol, nucleus, peroxisome | 69.74 | 46.59 |
| PGSC0003DMT400058477 | Potato | cytosol | 70.72 | 45.55 |
| Os06t0211500-00 | Rice | cytosol | 28.29 | 45.03 |
| Solyc01g008910.2.1 | Tomato | cytosol | 69.74 | 44.54 |
| KRH77666 | Soybean | endoplasmic reticulum, nucleus, peroxisome, plastid | 67.11 | 43.87 |
| KRH27822 | Soybean | nucleus, plastid | 66.78 | 42.92 |
| CDY43123 | Canola | cytosol, extracellular, plastid | 8.55 | 42.62 |
| CDY50706 | Canola | cytosol, extracellular, plastid | 8.55 | 42.62 |
| GSMUA_Achr8P09690_001 | Banana | cytosol | 61.84 | 42.15 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, peroxisome, plastid | 61.84 | 39.75 |
| Os01t0948200-00 | Rice | cytosol | 57.24 | 39.37 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 56.58 | 38.48 |
| HORVU2Hr1G113490.1 | Barley | cytosol | 39.8 | 38.41 |
| HORVU2Hr1G113480.1 | Barley | cytosol | 39.8 | 38.41 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 56.91 | 38.02 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 56.25 | 37.75 |
| Zm00001d042127_P001 | Maize | plastid | 54.93 | 37.36 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 38.16 | 36.94 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 37.83 | 36.62 |
| EES02045 | Sorghum | cytosol, plastid | 55.26 | 36.6 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 37.17 | 36.22 |
| Zm00001d011881_P001 | Maize | cytosol | 52.96 | 35.86 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 17.11 | 35.62 |
| Os11t0141500-00 | Rice | cytosol | 49.34 | 30.49 |
| Os12t0138100-00 | Rice | cytosol | 49.34 | 30.49 |
| Zm00001d023248_P001 | Maize | cytosol | 49.34 | 29.64 |
| CDY64484 | Canola | mitochondrion | 23.68 | 29.27 |
| TraesCSU01G014000.1 | Wheat | cytosol | 28.29 | 29.25 |
| EES16518 | Sorghum | cytosol | 42.76 | 28.89 |
| CDY37137 | Canola | plastid | 90.46 | 28.83 |
| HORVU5Hr1G043310.1 | Barley | cytosol | 50.0 | 27.64 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 50.0 | 27.54 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 50.33 | 27.37 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 38.49 | 27.21 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 49.67 | 27.21 |
| HORVU4Hr1G026010.3 | Barley | cytosol | 38.49 | 26.23 |
| EES09233 | Sorghum | cytosol | 41.45 | 25.87 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 37.83 | 25.78 |
| Os12t0138200-00 | Rice | cytosol | 43.09 | 25.69 |
| KXG22822 | Sorghum | mitochondrion | 48.36 | 25.48 |
| Os11t0141700-00 | Rice | cytosol | 42.11 | 25.3 |
| HORVU2Hr1G113360.1 | Barley | cytosol | 39.14 | 25.05 |
| OQU77884 | Sorghum | plasma membrane | 36.51 | 24.4 |
| Zm00001d052463_P001 | Maize | cytosol | 41.78 | 24.28 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 37.83 | 24.26 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 37.83 | 24.21 |
| CDY50028 | Canola | nucleus, plastid | 32.57 | 23.74 |
| CDY54362 | Canola | plastid | 32.57 | 23.52 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 34.87 | 22.94 |
| CDY70426 | Canola | cytosol | 38.16 | 22.88 |
| CDY55037 | Canola | cytosol | 37.5 | 22.49 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 34.54 | 21.56 |
| CDY27670 | Canola | cytosol | 28.62 | 21.53 |
| CDY38434 | Canola | cytosol | 35.53 | 21.18 |
| OQU77885 | Sorghum | cytosol | 33.55 | 21.16 |
| CDY16915 | Canola | cytosol, nucleus, plastid | 35.53 | 20.57 |
| Zm00001d023247_P001 | Maize | plastid | 37.5 | 20.36 |
| Os05t0378200-00 | Rice | cytosol | 36.84 | 20.33 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 35.86 | 19.6 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 35.86 | 19.06 |
| CDY04092 | Canola | cytosol | 31.91 | 18.16 |
| CDY64837 | Canola | cytosol | 31.91 | 17.9 |
| CDY72338 | Canola | cytosol | 33.55 | 17.44 |
| GSMUA_Achr11P... | Banana | cytosol | 62.83 | 17.33 |
| CDY53846 | Canola | cytosol | 32.89 | 17.15 |
| CDX78219 | Canola | nucleus, plastid | 33.22 | 16.75 |
| CDY49199 | Canola | plastid | 34.54 | 16.61 |
| CDY70213 | Canola | plastid | 34.87 | 16.49 |
| CDX73496 | Canola | nucleus, plastid | 33.22 | 16.24 |
| CDY47352 | Canola | plastid | 33.55 | 16.01 |
| CDY45974 | Canola | plastid | 33.88 | 15.97 |
| Os05t0378500-00 | Rice | plastid | 28.29 | 15.36 |
| CDY43122 | Canola | nucleus | 14.8 | 10.79 |
| CDY50707 | Canola | cytosol, nucleus, plastid | 14.47 | 10.58 |
| Os12t0138166-00 | Rice | endoplasmic reticulum, extracellular | 0.33 | 0.28 |
| Os11t0141550-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.12 | GO:A0A078I6N5 | UniProt:A0A078I6N5 | EnsemblPlants:CDY45059 | ProteinID:CDY45059 | ProteinID:CDY45059.1 |
| GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00081323001 | InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF13 | InterPro:Scarecrow-like_3 | InterPro:TF_GRAS | UniParc:UPI0004EE61EC | : |
Description
BnaA08g02160DBnaA08g02160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6N5]
Coordinates
chrLK032612:-:177438..178632
Molecular Weight (calculated)
34307.2 Da
IEP (calculated)
6.243
GRAVY (calculated)
-0.242
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPILKVSYL LTNRAILEAM EGEKMVHVID LDASEPAQWL ALIQAFNSRP EGPPHLRITG VHHQKEVLDQ MAHRLIEEAE KLDIPFQFNP VVSSLQCLNV
101: EQLRVKTGEA LAVSSVLQLH NLLASDVTSN NGHSLSGDSA SSLPLSNSGK IDSFLNAIWG LSPKIMVVTE QDSDHNGSTV MERLLESLYT YAALFDCLET
201: KVPRTSQDRM KVEKMLFGEE IKNIIACEGS ERRERHEKLE KWSQRIDLAG FGNVPLSYYA MLQARRLLQG YGFDGYRIKE ESGCAVICWQ DRPLYSVSAW
301: RCRK
101: EQLRVKTGEA LAVSSVLQLH NLLASDVTSN NGHSLSGDSA SSLPLSNSGK IDSFLNAIWG LSPKIMVVTE QDSDHNGSTV MERLLESLYT YAALFDCLET
201: KVPRTSQDRM KVEKMLFGEE IKNIIACEGS ERRERHEKLE KWSQRIDLAG FGNVPLSYYA MLQARRLLQG YGFDGYRIKE ESGCAVICWQ DRPLYSVSAW
301: RCRK
001: MVAMFQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
101: ALANRILKSW PGLYKALNAT QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA LLQAFNSRPE GPPHLRITGV
201: HHQKEVLEQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGVDLQRVL MMSHGSAAEA
301: RENDMSNNNG YSPSGDSASS LPLPSSGRTD SFLNAIWGLS PKVMVVTEQD SDHNGSTLME RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK
401: NIISCEGFER RERHEKLEKW SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC RK
Arabidopsis Description
SCL3Scarecrow-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPR8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.