Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025456.1-P | Field mustard | mitochondrion | 60.64 | 99.59 |
| CDY64484 | Canola | mitochondrion | 58.17 | 95.53 |
| AT5G41920.1 | Thale cress | cytosol | 83.42 | 83.21 |
| KRH29089 | Soybean | mitochondrion | 65.84 | 60.18 |
| VIT_03s0017g01660.t01 | Wine grape | plastid | 65.35 | 59.73 |
| PGSC0003DMT400030652 | Potato | cytosol | 59.9 | 58.88 |
| KRH24117 | Soybean | plastid | 63.86 | 57.98 |
| Solyc07g043330.1.1 | Tomato | plastid | 59.9 | 56.02 |
| Os07t0567700-02 | Rice | cytosol | 62.38 | 55.14 |
| Zm00001d021826_P001 | Maize | cytosol | 61.63 | 55.09 |
| KXG36498 | Sorghum | cytosol, plastid | 61.63 | 54.13 |
| TraesCS2D01G208500.1 | Wheat | cytosol | 59.41 | 53.45 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 59.41 | 53.45 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 59.41 | 53.33 |
| GSMUA_Achr4P23590_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 38.61 | 50.65 |
| HORVU0Hr1G003230.2 | Barley | mitochondrion | 55.94 | 48.81 |
| CDY43123 | Canola | cytosol, extracellular, plastid | 6.19 | 40.98 |
| CDY50706 | Canola | cytosol, extracellular, plastid | 6.19 | 40.98 |
| CDX78219 | Canola | nucleus, plastid | 52.97 | 35.49 |
| CDX73496 | Canola | nucleus, plastid | 53.71 | 34.89 |
| CDY50028 | Canola | nucleus, plastid | 32.18 | 31.18 |
| CDY54362 | Canola | plastid | 31.93 | 30.64 |
| CDY45059 | Canola | cytosol | 21.53 | 28.62 |
| CDY68881 | Canola | cytosol | 16.09 | 26.64 |
| CDY03601 | Canola | cytosol | 27.97 | 25.17 |
| CDY22795 | Canola | cytosol, plastid | 27.23 | 24.77 |
| CDY38434 | Canola | cytosol | 30.69 | 24.31 |
| CDY16915 | Canola | cytosol, nucleus, plastid | 30.69 | 23.62 |
| CDY55037 | Canola | cytosol | 28.96 | 23.08 |
| CDY36236 | Canola | cytosol, nucleus, plastid | 31.44 | 22.84 |
| CDY70426 | Canola | cytosol | 28.47 | 22.68 |
| CDY17662 | Canola | cytosol, nucleus, plastid | 31.44 | 22.2 |
| CDY04092 | Canola | cytosol | 27.48 | 20.79 |
| CDY64837 | Canola | cytosol | 27.23 | 20.3 |
| CDY72338 | Canola | cytosol | 29.21 | 20.17 |
| CDY53846 | Canola | cytosol | 28.71 | 19.9 |
| CDY49199 | Canola | plastid | 30.2 | 19.3 |
| CDY70213 | Canola | plastid | 30.69 | 19.28 |
| CDY47352 | Canola | plastid | 30.2 | 19.15 |
| CDY45974 | Canola | plastid | 30.45 | 19.07 |
| CDY43122 | Canola | nucleus | 16.09 | 15.59 |
| CDY50707 | Canola | cytosol, nucleus, plastid | 15.84 | 15.38 |
| CDY37137 | Canola | plastid | 27.23 | 11.53 |
Protein Annotations
| EnsemblPlants:CDY27670 | EnsemblPlantsGene:GSBRNA2T00038440001 | GO:A0A078GM89 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF35 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:CDY27670 | ProteinID:CDY27670.1 |
| UniParc:UPI0004EE9962 | UniProt:A0A078GM89 | MapMan:15.5.12 | : | : | : |
Description
BnaUnng00200DBnaUnng00200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM89]
Coordinates
chrLK032208:-:100413..101764
Molecular Weight (calculated)
44475.0 Da
IEP (calculated)
5.818
GRAVY (calculated)
-0.092
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKRVHGDY PSSTIKRHKD LDFPEDTTTA LENDDGAAAI NLLSLLLQCA EYVATDHLRE ASILLSEISE TCSPFGSSPE RVVAYFAQAL QARVISTYLS
101: SACSQLSESP LQSQKIFAAL QTFNSLSPLI KFSHFTANQA IFQALDGEDS VHIIDLDVMQ GLQWPGLFHI LASRPRKIRS IRITGFGPSS DILASTGRRL
201: ADFAASLSLP FEFRPIVGKI GNVTDPSRLG RRPGEAVVVH WMQHRLYDVT GSDHDALEII RRLRPSLVTM VEQELSYDDG GGGCFLGRFV EALHYYSALF
301: DALGDGLGEE SGERFTVEQI VLATEIRNIV GGKGRGMMRW KEELSRVGFR PVSLRGNPAT QAGLLLGMLP WNGYTLVEEN GTLRLGWKDL SLLTASAWQF
401: QPSD
101: SACSQLSESP LQSQKIFAAL QTFNSLSPLI KFSHFTANQA IFQALDGEDS VHIIDLDVMQ GLQWPGLFHI LASRPRKIRS IRITGFGPSS DILASTGRRL
201: ADFAASLSLP FEFRPIVGKI GNVTDPSRLG RRPGEAVVVH WMQHRLYDVT GSDHDALEII RRLRPSLVTM VEQELSYDDG GGGCFLGRFV EALHYYSALF
301: DALGDGLGEE SGERFTVEQI VLATEIRNIV GGKGRGMMRW KEELSRVGFR PVSLRGNPAT QAGLLLGMLP WNGYTLVEEN GTLRLGWKDL SLLTASAWQF
401: QPSD
001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD
Arabidopsis Description
SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.