Factsheet for Bra025456.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra010606.1-P
Bra011777.1-P
Bra017842.1-P
Bra018296.1-P
Bra033467.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	Bra000214.1-P	AT2G41100.1	17360592
AT5G41920.1	Bra018296.1-P	AT3G51920.1	17360592
AT5G41920.1	Bra033467.1-P	AT3G51920.1	17360592
AT5G41920.1	Bra010606.1-P	AT4G37650.1	18500650
AT5G41920.1	Bra011777.1-P	AT4G37650.1	18500650
AT5G41920.1	Bra017842.1-P	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27670	Canola	cytosol	99.59	60.64
AT5G41920.1	Thale cress	cytosol	85.37	51.85
Bra007056.1-P	Field mustard	mitochondrion, plastid	60.57	47.15
VIT_03s0017g01660.t01	Wine grape	plastid	72.36	40.27
KRH29089	Soybean	mitochondrion	72.36	40.27
PGSC0003DMT400030652	Potato	cytosol	66.26	39.66
KRH24117	Soybean	plastid	69.92	38.65
Solyc07g043330.1.1	Tomato	plastid	66.26	37.73
Zm00001d021826_P001	Maize	cytosol	68.29	37.17
GSMUA_Achr4P23590_001	Banana	cytosol, mitochondrion, nucleus, plastid	46.34	37.01
KXG36498	Sorghum	cytosol, plastid	68.7	36.74
Os07t0567700-02	Rice	cytosol	67.48	36.32
TraesCS2A01G200700.1	Wheat	cytosol	65.04	35.56
TraesCS2D01G208500.1	Wheat	cytosol	64.63	35.41
TraesCS2B01G228000.1	Wheat	cytosol	64.63	35.41
HORVU0Hr1G003230.2	Barley	mitochondrion	59.35	31.53
Bra012102.1-P	Field mustard	cytosol	21.14	30.95
Bra038002.1-P	Field mustard	nucleus, plastid	36.99	20.54
Bra013973.1-P	Field mustard	cytosol	36.18	16.95
Bra039762.1-P	Field mustard	cytosol	32.52	16.39
Bra014251.1-P	Field mustard	cytosol	29.27	16.18
Bra018848.1-P	Field mustard	cytosol	28.46	15.91
Bra024875.1-P	Field mustard	nucleus	36.18	15.53
Bra031991.1-P	Field mustard	cytosol, nucleus, plastid	30.89	15.05
Bra026999.1-P	Field mustard	nucleus, plastid	36.18	14.76
Bra027620.1-P	Field mustard	plastid	36.59	14.24
Bra017443.1-P	Field mustard	cytosol	29.67	13.35

Protein Annotations

MapMan:15.5.12	EnsemblPlantsGene:Bra025456	EnsemblPlants:Bra025456.1	EnsemblPlants:Bra025456.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0048366
GO:GO:0090610	InterPro:IPR005202	UniProt:M4E9K0	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF35	InterPro:TF_GRAS	UniParc:UPI000254386E	:	:	:

Description

AT5G41920 (E=1e-117) | scarecrow transcription factor family protein

Coordinates

chrA04:+:8646791..8647531

Molecular Weight (calculated)

27245.9 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.125

Length

246 amino acids

Sequence
(BLAST)

001: MQGLQWPGLF HILASRPRKI RSIRITGFGP SSDILASTGR RLADFAASLS LPFEFRPIVG KIGNVTDPSR LGRRPGEAVV VHWMQHRLYD VTGSDLDALE
101: IIRRLRPSLV TMVEQELSYD DGGGGCFLGR FVEALHYYSA LFDALGDGLG EESGERFTVE QIVLATEIRN IVGGKGRGMM RWKEELSRVG FRPVSLRGNP
201: ATQAGLLLGM LPWNGYTLVE ENGTLRLGWK DLSLLTASAW QFQPSD

Best Arabidopsis Sequence Match ( AT5G41920.1 )
(BLAST)

001: MTTKRIDRDL PSSDDPSSAK RRIEFPEETL ENDGAAAIKL LSLLLQCAEY VATDHLREAS TLLSEISEIC SPFGSSPERV VAYFAQALQT RVISSYLSGA
101: CSPLSEKPLT VVQSQKIFSA LQTYNSVSPL IKFSHFTANQ AIFQALDGED SVHIIDLDVM QGLQWPALFH ILASRPRKLR SIRITGFGSS SDLLASTGRR
201: LADFASSLNL PFEFHPIEGI IGNLIDPSQL ATRQGEAVVV HWMQHRLYDV TGNNLETLEI LRRLKPNLIT VVEQELSYDD GGSFLGRFVE ALHYYSALFD
301: ALGDGLGEES GERFTVEQIV LGTEIRNIVA HGGGRRKRMK WKEELSRVGF RPVSLRGNPA TQAGLLLGML PWNGYTLVEE NGTLRLGWKD LSLLTASAWK
401: SQPFD

Arabidopsis Description

SCL23Scarecrow-like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.