Factsheet for GSMUA_Achr4P23590_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P22470_001
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr4P16460_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr8P30950_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41920.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT5G41920.1	GSMUA_Achr1P22470_001	AT4G37650.1	18500650
AT5G41920.1	GSMUA_Achr4P16460_001	AT4G37650.1	18500650
AT5G41920.1	GSMUA_Achr8P30950_001	AT4G37650.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0567700-02	Rice	cytosol	71.75	48.36
Zm00001d021826_P001	Maize	cytosol	69.48	47.35
TraesCS2B01G228000.1	Wheat	cytosol	68.83	47.22
TraesCS2A01G200700.1	Wheat	cytosol	68.83	47.11
TraesCS2D01G208500.1	Wheat	cytosol	68.51	46.99
KXG36498	Sorghum	cytosol, plastid	69.48	46.52
Bra025456.1-P	Field mustard	mitochondrion	37.01	46.34
CDY64484	Canola	mitochondrion	37.01	46.34
VIT_03s0017g01660.t01	Wine grape	plastid	64.61	45.02
PGSC0003DMT400030652	Potato	cytosol	59.42	44.53
Solyc07g043330.1.1	Tomato	plastid	60.39	43.06
KRH29089	Soybean	mitochondrion	61.36	42.76
HORVU0Hr1G003230.2	Barley	mitochondrion	62.66	41.68
KRH24117	Soybean	plastid	59.74	41.35
CDY27670	Canola	cytosol	50.65	38.61
AT5G41920.1	Thale cress	cytosol	50.0	38.02
GSMUA_Achr11P...	Banana	plastid	47.08	25.26
GSMUA_Achr8P09400_001	Banana	cytosol	53.57	24.55
GSMUA_Achr5P21440_001	Banana	nucleus, plastid	49.03	21.36
GSMUA_Achr8P09690_001	Banana	cytosol	29.87	20.63
GSMUA_Achr1P09360_001	Banana	cytosol	24.68	20.6
GSMUA_Achr1P19470_001	Banana	nucleus	25.0	20.1
GSMUA_Achr8P01180_001	Banana	nucleus	29.55	19.91
GSMUA_AchrUn_...	Banana	cytosol	24.68	19.9
GSMUA_Achr7P16880_001	Banana	cytosol	24.35	19.79
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	29.55	19.24
GSMUA_Achr10P...	Banana	cytosol	29.22	18.83
GSMUA_Achr6P17870_001	Banana	cytosol	25.97	17.94
GSMUA_Achr8P18250_001	Banana	cytosol	26.62	17.12
GSMUA_Achr1P16230_001	Banana	cytosol	19.48	16.85
GSMUA_Achr10P...	Banana	nucleus	23.7	16.63
GSMUA_Achr6P20830_001	Banana	nucleus	31.82	16.07
GSMUA_AchrUn_...	Banana	cytosol	26.62	15.33
GSMUA_Achr4P07320_001	Banana	cytosol	25.97	14.26
GSMUA_Achr3P30530_001	Banana	cytosol	26.3	14.04
GSMUA_Achr6P34550_001	Banana	mitochondrion, nucleus, peroxisome, plastid	27.6	13.91
GSMUA_Achr1P21300_001	Banana	nucleus	20.78	12.4
GSMUA_Achr1P18840_001	Banana	cytosol	24.35	12.21
GSMUA_Achr7P05850_001	Banana	mitochondrion	25.65	12.15
GSMUA_Achr4P19750_001	Banana	cytosol, mitochondrion, nucleus, plastid	25.97	9.28
GSMUA_Achr11P...	Banana	cytosol	30.52	8.53

Protein Annotations

MapMan:15.5.12	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0048366	GO:GO:0090610	EnsemblPlantsGene:GSMUA_Achr4G23590_001	EnsemblPlants:GSMUA_Achr4P23590_001
EnsemblPlants:GSMUA_Achr4T23590_001	InterPro:IPR005202	UniProt:M0SRH0	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF35	InterPro:TF_GRAS	UniParc:UPI000294977A	SEG:seg	:	:

Description

Protein SCARECROW [Source:GMGC_GENE;Acc:GSMUA_Achr4G23590_001]

Coordinates

chr4:+:23631834..23633186

Molecular Weight (calculated)

33332.4 Da

IEP (calculated)

5.583

GRAVY (calculated)

-0.300

Length

308 amino acids

Sequence
(BLAST)

001: MRPKRPERDP SSSSAGGSTA APGHATPGCG DVEDEDRARK KRNQHQPEME IVVAEEEHVE AEGRGAESRG LRLLGLLLRC AEAVAADQLA EARDLLPEIS
101: ELASPFGSSP ERVAAYFADA LRARIATVVH WMHHCLYDVT GSDAGTVRLL QALRPKLITI VEQDLSHAGG FLGRFVEALH YYSALFDALG DGAGADSEER
201: HAVERQLLAA EIKNIVAVGG PKRTGEVKVE RWGEELSKAG FRRVSLAGSP AAQANLLLGM FPWKGYTLVE EHGCLKLGWK DLSLLTASAW QPAADDHDVE
301: ADRIPHIS

Best Arabidopsis Sequence Match ( AT3G54220.1 )
(BLAST)

001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS

Arabidopsis Description

SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.