Factsheet for VIT_04s0023g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66770.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT5G66770.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT5G66770.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT5G66770.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038574	Potato	cytosol	64.6	64.81
Solyc02g085340.1.1	Tomato	cytosol	64.11	64.53
KRH24039	Soybean	cytosol	48.29	61.54
KRH29015	Soybean	cytosol	28.55	61.4
AT5G66770.1	Thale cress	cytosol	56.93	59.76
AT3G50650.1	Thale cress	cytosol	50.9	57.56
CDY72338	Canola	cytosol	54.16	56.75
CDY53846	Canola	cytosol	53.67	56.43
GSMUA_Achr3P30530_001	Banana	cytosol	48.94	51.99
Bra012102.1-P	Field mustard	cytosol	13.87	50.6
GSMUA_AchrUn_...	Banana	cytosol	44.05	50.47
TraesCS4B01G054000.1	Wheat	cytosol	43.56	48.81
TraesCS4D01G054000.1	Wheat	cytosol	43.56	48.55
TraesCS4A01G260600.1	Wheat	cytosol	43.07	48.44
GSMUA_Achr4P07320_001	Banana	cytosol	43.23	47.24
KXG37683	Sorghum	cytosol, mitochondrion, peroxisome, plastid	41.92	45.98
Zm00001d033834_P001	Maize	cytosol, plastid	41.27	45.92
Os03t0723000-01	Rice	nucleus	42.74	45.33
Zm00001d013385_P001	Maize	cytosol, plastid	41.92	45.17
HORVU4Hr1G008930.3	Barley	cytosol, mitochondrion	24.8	43.06
HORVU4Hr1G008980.3	Barley	mitochondrion, nucleus	34.09	37.79
VIT_19s0015g01930.t01	Wine grape	cytosol	22.35	33.17
VIT_18s0076g00200.t01	Wine grape	cytosol	15.33	28.83
VIT_07s0005g03700.t01	Wine grape	cytosol	20.72	26.08
VIT_03s0017g01660.t01	Wine grape	plastid	18.76	26.02
VIT_06s0009g02390.t01	Wine grape	cytosol	20.07	25.95
VIT_13s0019g01220.t01	Wine grape	cytosol	20.23	25.94
VIT_14s0006g00640.t01	Wine grape	cytosol	22.02	23.73
VIT_11s0016g04630.t01	Wine grape	plastid	20.07	23.12
VIT_17s0000g10300.t01	Wine grape	nucleus	19.09	22.54
VIT_19s0085g00540.t01	Wine grape	cytosol	18.92	21.89
VIT_01s0011g05260.t01	Wine grape	cytosol	20.07	20.85
VIT_14s0068g01610.t01	Wine grape	plastid	22.68	20.81
VIT_02s0025g04000.t01	Wine grape	plastid	22.02	20.58
VIT_08s0056g00050.t01	Wine grape	nucleus	21.53	16.88

Protein Annotations

EntrezGene:100246179	wikigene:100246179	MapMan:15.5.12	EMBL:AM458867	ProteinID:CAN74537	ProteinID:CAN74537.1
ProteinID:CCB44454	ProteinID:CCB44454.1	ncoils:Coil	UniProt:F6GWW8	EMBL:FN594959	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR005202	EntrezGene:LOC100246179
wikigene:LOC100246179	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF65	InterPro:TF_GRAS
UniParc:UPI0002109A1E	ArrayExpress:VIT_04s0023g01660	EnsemblPlantsGene:VIT_04s0023g01660	EnsemblPlants:VIT_04s0023g01660.t01	unigene:Vvi.15364	RefSeq:XP_002267140
RefSeq:XP_002267140.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:18196835..18200085

Molecular Weight (calculated)

66996.8 Da

IEP (calculated)

4.972

GRAVY (calculated)

-0.346

Length

613 amino acids

Sequence
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QQQQQLGGVN SFCLNPWTTT PHTMSTAPAL GYGLAGAGFS DPFQVAGTAD AGEGGFQFAH LEHHSTGFRF
101: SDFSGGGGGE FDSDEWMDSL MGGGDSTESS NLPSGCDAWQ NDADLTLYGA DPFTSCPSRL SIASSPTSDL NRVIFSDAQK CTNPPLQPQV PSWSPSPSPT
201: PTPPPPPPPP PAVVKDTKPA NPPPAHLQKN DVAGVSSGSP EAESAPPILK ALLDCARLAD SEPDRAVKSL IRLRESVSEH GDPTERVAFY FSEALYSRVS
301: HQAEKRPTLF ETSSEEFTLS YKALNDACPY SKFAHLTANQ AILEATERAR KIHIVDFGIV QGVQWAALLQ ALATRSAGKP ARIRISGIPA PALGKSPASS
401: LFATGNRLRD FARLLDLNFE FEPILTPIQE LNESTFRVDP DEVLAVNFML QLYNLLDETP VSVNAALRLA KSLNPKIMTL GEYEACLNEV DFINRFKNAL
501: RYYRAIFDSL EPNLARDSSD RLQVERLLLG RRIAGVIGPE EPGTRRERME DKEKWKFLVE SCGFESVPLS HYASIDEAWK EVTNRFPPLS KTQGASAVHD
601: KVANGLIFLF LFC

Best Arabidopsis Sequence Match ( AT5G66770.1 )
(BLAST)

001: MAYMCTDSGN LMAIAQQVIK QKQQQEQQQQ QHHQDHQIFG INPLSLNPWP NTSLGFGLSG SAFPDPFQVT GGGDSNDPGF PFPNLDHHHA TTTGGGFRLS
101: DFGGGTGGGE FESDEWMETL ISGGDSVADG PDCDTWHDNP DYVIYGPDPF DTYPSRLSVQ PSDLNRVIDT SSPLPPPTLW PPSSPLSIPP LTHESPTKED
201: PETNDSEDDD FDLEPPLLKA IYDCARISDS DPNEASKTLL QIRESVSELG DPTERVAFYF TEALSNRLSP NSPATSSSSS STEDLILSYK TLNDACPYSK
301: FAHLTANQAI LEATEKSNKI HIVDFGIVQG IQWPALLQAL ATRTSGKPTQ IRVSGIPAPS LGESPEPSLI ATGNRLRDFA KVLDLNFDFI PILTPIHLLN
401: GSSFRVDPDE VLAVNFMLQL YKLLDETPTI VDTALRLAKS LNPRVVTLGE YEVSLNRVGF ANRVKNALQF YSAVFESLEP NLGRDSEERV RVERELFGRR
501: ISGLIGPEKT GIHRERMEEK EQWRVLMENA GFESVKLSNY AVSQAKILLW NYNYSNLYSI VESKPGFISL AWNDLPLLTL SSWR

Arabidopsis Description

SCL4Scarecrow-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.