Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 92.25 | 97.41 |
| HORVU3Hr1G058100.1 | Barley | plastid | 95.65 | 89.88 |
| TraesCS3D01G220100.3 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 90.74 | 89.39 |
| Os01t0646300-01 | Rice | cytosol | 77.5 | 82.83 |
| OQU87235 | Sorghum | extracellular | 44.23 | 79.32 |
| Zm00001d044065_P001 | Maize | cytosol | 67.49 | 75.16 |
| KRG92263 | Soybean | cytosol | 44.8 | 59.4 |
| KRH34544 | Soybean | cytosol | 45.56 | 49.39 |
| KRH63032 | Soybean | cytosol | 46.69 | 49.11 |
| TraesCS4B01G342800.1 | Wheat | cytosol | 40.83 | 49.09 |
| KRH54840 | Soybean | cytosol | 46.69 | 48.91 |
| VIT_11s0016g04630.t01 | Wine grape | plastid | 47.26 | 46.99 |
| GSMUA_Achr6P34550_001 | Banana | mitochondrion, nucleus, peroxisome, plastid | 52.74 | 45.66 |
| TraesCS1B01G443800.1 | Wheat | cytosol | 42.91 | 43.91 |
| TraesCS4B01G133000.1 | Wheat | cytosol, nucleus, plastid | 10.02 | 36.3 |
| TraesCS4B01G043100.1 | Wheat | cytosol | 41.02 | 34.94 |
| TraesCS3B01G535100.1 | Wheat | cytosol | 28.36 | 33.11 |
| TraesCS2B01G228000.1 | Wheat | cytosol | 27.03 | 31.85 |
| TraesCS6B01G191800.1 | Wheat | cytosol | 23.25 | 31.14 |
| TraesCS3B01G424500.1 | Wheat | cytosol | 29.3 | 29.98 |
| TraesCS3B01G424600.1 | Wheat | cytosol | 29.11 | 29.67 |
| TraesCS7B01G285500.1 | Wheat | cytosol | 24.01 | 29.6 |
| TraesCS1B01G314500.1 | Wheat | peroxisome | 24.76 | 28.42 |
| TraesCS2B01G320700.1 | Wheat | cytosol, mitochondrion, nucleus | 24.01 | 26.13 |
| TraesCS2B01G562400.1 | Wheat | cytosol | 23.25 | 25.95 |
| TraesCS4B01G054000.1 | Wheat | cytosol | 26.46 | 25.59 |
| TraesCS5B01G133800.1 | Wheat | mitochondrion | 26.28 | 25.18 |
| TraesCS5B01G143100.1 | Wheat | plastid | 29.11 | 24.14 |
| TraesCS2B01G112100.1 | Wheat | nucleus | 32.51 | 24.06 |
| TraesCS4B01G124000.1 | Wheat | plastid | 28.54 | 22.24 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G262400.1 | EnsemblPlantsGene:TraesCS3B01G262400 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF7 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:11.6.2.2 | MapMan:15.5.12 | MapMan:26.6.2.1 |
Description
No Description!
Coordinates
chr3B:-:420922295..420923884
Molecular Weight (calculated)
56193.3 Da
IEP (calculated)
6.022
GRAVY (calculated)
-0.070
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPRPAKRAR TPFHHFHPPT AHRFHSGGMA MGTFPFQWPM DPAPAPPSGL DGSLLPSLLP PPPAPVPDDG AAYYAAADMQ ASSMPELAAP FPSRDAVAAE
101: LAMRRAEEEA AGIRLVHLLM SCAGAVEAGD HALAAAHLAD ANASLAAVST ASGIGRVAVH FTDALSRRLF RSPATPPATD AEHAFLYHHF YEACPYLKFA
201: HFTANQAILE AFHGCDSVHV IDFSLMQGLQ WPALIQALAL RPGGPPFLRI TGIGPPSPPG RDELRDVGLR LADLARSVRV RFSFRGVAAN SLDEVHPWML
301: QIAPGEAVAV NSVLQLHRLL ADTADQAPID AVLDCVASLQ PKIFTVVEQE ADHNKPGFLD RFTEALFYYS AVFDSLDAAS ANGTGNAMAE AYLQREICDI
401: VCNEGTARME RHEPLSQWRD RLGRAGLSAV PLGASALRQA RMLLGLFSGE GHSVEEAEGC LTLGWHGRPL FSASAWRAAT VVCDADGEDN HTSNNSNFSG
501: SSGGGSDSNN SSSSNGKCSG VVGASNMFL
101: LAMRRAEEEA AGIRLVHLLM SCAGAVEAGD HALAAAHLAD ANASLAAVST ASGIGRVAVH FTDALSRRLF RSPATPPATD AEHAFLYHHF YEACPYLKFA
201: HFTANQAILE AFHGCDSVHV IDFSLMQGLQ WPALIQALAL RPGGPPFLRI TGIGPPSPPG RDELRDVGLR LADLARSVRV RFSFRGVAAN SLDEVHPWML
301: QIAPGEAVAV NSVLQLHRLL ADTADQAPID AVLDCVASLQ PKIFTVVEQE ADHNKPGFLD RFTEALFYYS AVFDSLDAAS ANGTGNAMAE AYLQREICDI
401: VCNEGTARME RHEPLSQWRD RLGRAGLSAV PLGASALRQA RMLLGLFSGE GHSVEEAEGC LTLGWHGRPL FSASAWRAAT VVCDADGEDN HTSNNSNFSG
501: SSGGGSDSNN SSSSNGKCSG VVGASNMFL
001: MKRDHHQFQG RLSNHGTSSS SSSISKDKMM MVKKEEDGGG NMDDELLAVL GYKVRSSEMA EVALKLEQLE TMMSNVQEDG LSHLATDTVH YNPSELYSWL
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
101: DNMLSELNPP PLPASSNGLD PVLPSPEICG FPASDYDLKV IPGNAIYQFP AIDSSSSSNN QNKRLKSCSS PDSMVTSTST GTQIGGVIGT TVTTTTTTTT
201: AAGESTRSVI LVDSQENGVR LVHALMACAE AIQQNNLTLA EALVKQIGCL AVSQAGAMRK VATYFAEALA RRIYRLSPPQ NQIDHCLSDT LQMHFYETCP
301: YLKFAHFTAN QAILEAFEGK KRVHVIDFSM NQGLQWPALM QALALREGGP PTFRLTGIGP PAPDNSDHLH EVGCKLAQLA EAIHVEFEYR GFVANSLADL
401: DASMLELRPS DTEAVAVNSV FELHKLLGRP GGIEKVLGVV KQIKPVIFTV VEQESNHNGP VFLDRFTESL HYYSTLFDSL EGVPNSQDKV MSEVYLGKQI
501: CNLVACEGPD RVERHETLSQ WGNRFGSSGL APAHLGSNAF KQASMLLSVF NSGQGYRVEE SNGCLMLGWH TRPLITTSAW KLSTAAY
Arabidopsis Description
RGADELLA protein RGA [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.