Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G312100.1 | Wheat | mitochondrion, nucleus | 95.86 | 90.5 |
| TraesCS3B01G346900.1 | Wheat | mitochondrion, nucleus | 91.72 | 88.07 |
| HORVU3Hr1G076370.2 | Barley | mitochondrion, nucleus | 91.12 | 87.01 |
| OQU87658 | Sorghum | mitochondrion, nucleus | 63.91 | 61.02 |
| GSMUA_Achr2P17690_001 | Banana | nucleus | 46.75 | 43.17 |
| VIT_01s0026g01530.t01 | Wine grape | mitochondrion, nucleus | 40.83 | 36.9 |
| CDY40279 | Canola | nucleus | 38.46 | 34.76 |
| Bra012430.1-P | Field mustard | nucleus | 37.87 | 34.22 |
| Os01t0777400-01 | Rice | mitochondrion | 23.67 | 32.26 |
| Os01t0777600-01 | Rice | mitochondrion | 23.67 | 32.26 |
| AT1G27050.1 | Thale cress | mitochondrion, nucleus | 37.87 | 31.22 |
| CDY28440 | Canola | mitochondrion, nucleus | 36.69 | 30.54 |
| KRH25616 | Soybean | cytosol | 20.12 | 29.06 |
| PGSC0003DMT400045469 | Potato | mitochondrion, nucleus | 34.91 | 28.78 |
| Solyc05g006960.2.1 | Tomato | nucleus | 34.32 | 25.55 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G319200.1 | EnsemblPlantsGene:TraesCS3A01G319200 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PFscan:PS50102 |
| SEG:seg | SUPFAM:SSF54928 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:561120044..561121249
Molecular Weight (calculated)
17564.9 Da
IEP (calculated)
10.105
GRAVY (calculated)
-0.200
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRRSRRRGK RGRTSPDPPA KRRRGPLESM PGELEAAPAP APSVVMVAGL PPGCGVIELK SRLEAYGPVA RTRIDAAAAT GHVSFRSAAA ATAAIAASLD
101: PECGITIGSK KVLVVQASEA PNNSTSVVQS DPADASNNFV SDALAIPSSR IAPEAIHKAR EIVAYDDLF
101: PECGITIGSK KVLVVQASEA PNNSTSVVQS DPADASNNFV SDALAIPSSR IAPEAIHKAR EIVAYDDLF
001: MSRKRDKPYT NRHTPARISK RRRPWAPSSS EHDEIIDKPI TKPPPPPALV VMGLPANCSV LELKSRFEIY GSISRIRIHK DGIGSVSYRT AESAEAAIAG
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
101: SHEPSFGISI DSKKLEVVWA TDPLVKWKEG VTAGEGKERT SSFSSKLLRP VMPLRKHGRS SRLASAIVNP RSDNTKGISG DGGISSPATT SEVKQRNIVT
201: YDDIV
Arabidopsis Description
ATHB54Uncharacterized protein At1g27050 [Source:UniProtKB/Swiss-Prot;Acc:P0CJ66]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.