CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69345
CDX74755
CDX75686
CDX90394
CDY27368
CDY37054
CDY53886
CDY60689
CDY69077

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22950.1	CDX74755	AT2G45660.1	15805477
AT4G22950.1	CDY27368	AT2G45660.1	15805477
AT4G22950.1	CDY37054	AT2G45660.1	15805477
AT4G22950.1	CDY53886	AT2G45660.1	15805477
AT4G22950.1	CDY60689	AT2G45660.1	15805477
AT4G22950.1	CDY69077	AT2G45660.1	15805477
AT4G22950.1	CDX69345	AT4G37940.1	15805477
AT4G22950.1	CDX75686	AT4G37940.1	15805477
AT4G22950.1	CDX90394	AT4G37940.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020826.1-P	Field mustard	nucleus	66.06	100.0
CDY55821	Canola	nucleus	99.55	99.55
CDY10829	Canola	nucleus	28.96	92.75
CDY41268	Canola	nucleus	28.96	92.75
CDY68007	Canola	nucleus	55.66	82.0
CDX98780	Canola	nucleus	76.92	77.63
AT4G22950.1	Thale cress	nucleus	74.66	75.34
CDY00504	Canola	nucleus	19.91	72.13
CDX86738	Canola	nucleus	70.14	70.45
CDY13289	Canola	nucleus	68.33	69.59
CDY41269	Canola	nucleus	53.39	69.41
CDY10828	Canola	nucleus	51.58	67.06
CDX94141	Canola	nucleus	32.13	58.68
VIT_02s0025g04650.t01	Wine grape	nucleus	55.66	57.48
CDY27368	Canola	nucleus	55.2	57.28
CDY37054	Canola	nucleus	55.2	57.28
CDX74755	Canola	nucleus	54.75	56.81
CDY69077	Canola	nucleus	54.75	56.81
CDY53886	Canola	nucleus	53.85	55.87
CDY60689	Canola	nucleus	52.49	54.46
KRH57267	Soybean	nucleus	55.2	53.74
KRH03997	Soybean	nucleus	52.94	52.47
CDY30701	Canola	nucleus	46.15	48.8
CDY32614	Canola	nucleus	24.43	48.65
CDY68754	Canola	nucleus	40.72	46.88
CDY16792	Canola	nucleus	40.72	46.63
CDY38882	Canola	nucleus	43.89	44.29
CDY32613	Canola	nucleus	43.44	43.84
CDY38881	Canola	nucleus	39.82	43.14
CDY02145	Canola	nucleus	40.27	42.18
CDY00505	Canola	nucleus	40.72	41.28
CDY56935	Canola	nucleus	38.01	41.18
CDY42874	Canola	nucleus	41.63	40.35
CDY55721	Canola	nucleus	39.82	40.0
CDY52354	Canola	nucleus	38.91	39.27
CDX94444	Canola	nucleus	38.91	39.27
CDY66015	Canola	nucleus	38.46	38.81
CDY51028	Canola	nucleus	38.01	36.36
CDY51029	Canola	nucleus	28.05	34.25

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078CGK6	EnsemblPlants:CDX76346	ProteinID:CDX76346	ProteinID:CDX76346.1
ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00126728001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF146	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EF32CA	SEG:seg	:	:

Description

BnaA08g10540D

Coordinates

chrLK031807:+:591299..595127

Molecular Weight (calculated)

25172.3 Da

IEP (calculated)

9.093

GRAVY (calculated)

-0.660

Length

221 amino acids

Sequence
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP TSKLYEFSSS SISKTIERYQ RRVTEIGINH KRDADSQQAR GETYGLTKKI
101: EQLEIIKRKM LGEGIDVCSI EELHQLENQL ERGLTRIRAK KYQLLREEID KLKEEERNLI KENKELNEKL SGMGAIVVAS SSSTLTSSEV NTDGNDSMEV
201: ETGLFIGPPE PRQSKKIYPQ C

Best Arabidopsis Sequence Match ( AT4G22950.3 )
(BLAST)

001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RSKLYEFSSS SIAATIERYQ RRIKEIGNNH KRNDNSQQAR DETSGLTKKI
101: EQLEISKRKL LGEGIDACSI EELQQLENQL DRSLSRIRAK KYQLLREEIE KLKAEERNLV KENKDLKEKW LGMGTATIAS SQSTLSSSEV NIDDNMEVET
201: GLFIGPPETR QSKKFPPQN

Arabidopsis Description

AGL19Agamous-like MADS-box protein AGL19 [Source:UniProtKB/Swiss-Prot;Acc:O82743]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.