Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G51860.1 | CDY25046 | AT1G48150.1 | 15805477 |
| AT5G51860.1 | CDY50584 | AT1G48150.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00504 | Canola | nucleus | 31.25 | 98.36 |
| Bra028282.1-P | Field mustard | nucleus | 96.35 | 91.58 |
| CDY38881 | Canola | nucleus | 89.06 | 83.82 |
| CDY32614 | Canola | nucleus | 45.31 | 78.38 |
| Solyc06g035570.1.1 | Tomato | nucleus | 21.35 | 75.93 |
| AT5G51860.1 | Thale cress | nucleus | 82.81 | 75.36 |
| CDY51028 | Canola | nucleus | 88.02 | 73.16 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 27.08 | 65.82 |
| CDY10829 | Canola | nucleus | 23.44 | 65.22 |
| CDY41268 | Canola | nucleus | 23.44 | 65.22 |
| CDY52354 | Canola | nucleus | 67.19 | 58.9 |
| CDX94444 | Canola | nucleus | 66.15 | 57.99 |
| CDY55721 | Canola | nucleus | 66.15 | 57.73 |
| CDY66015 | Canola | nucleus | 65.62 | 57.53 |
| CDY38882 | Canola | nucleus | 65.1 | 57.08 |
| CDY32613 | Canola | nucleus | 65.1 | 57.08 |
| CDY02145 | Canola | nucleus | 60.94 | 55.45 |
| CDY56935 | Canola | nucleus | 58.85 | 55.39 |
| CDY00505 | Canola | nucleus | 62.5 | 55.05 |
| CDY30701 | Canola | nucleus | 59.38 | 54.55 |
| CDY42874 | Canola | nucleus | 63.02 | 53.07 |
| CDY16792 | Canola | nucleus | 53.12 | 52.85 |
| PGSC0003DMT400062319 | Potato | nucleus | 30.73 | 49.58 |
| Os03t0834466-00 | Rice | nucleus | 16.67 | 49.23 |
| CDY51029 | Canola | nucleus | 46.35 | 49.17 |
| CDY68007 | Canola | nucleus | 37.5 | 48.0 |
| CDY37054 | Canola | nucleus | 53.12 | 47.89 |
| CDY27368 | Canola | nucleus | 52.6 | 47.42 |
| PGSC0003DMT400065060 | Potato | nucleus | 27.08 | 46.85 |
| CDY69077 | Canola | nucleus | 51.56 | 46.48 |
| CDX74755 | Canola | nucleus | 51.56 | 46.48 |
| CDY60689 | Canola | nucleus | 51.04 | 46.01 |
| CDY53886 | Canola | nucleus | 51.04 | 46.01 |
| KRG91427 | Soybean | nucleus | 50.52 | 45.33 |
| Solyc03g006830.2.1 | Tomato | nucleus | 52.08 | 45.05 |
| KRH35396 | Soybean | nucleus | 49.48 | 44.39 |
| GSMUA_Achr11P... | Banana | nucleus | 47.4 | 43.75 |
| GSMUA_Achr10P... | Banana | nucleus | 45.31 | 43.07 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 46.88 | 42.25 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 15.62 | 42.25 |
| CDX98780 | Canola | nucleus | 47.92 | 42.01 |
| CDY13289 | Canola | nucleus | 47.4 | 41.94 |
| CDX86738 | Canola | nucleus | 47.4 | 41.36 |
| CDY55821 | Canola | nucleus | 46.88 | 40.72 |
| CDX76346 | Canola | nucleus | 46.88 | 40.72 |
| CDY41269 | Canola | nucleus | 26.56 | 30.0 |
| CDY10828 | Canola | nucleus | 26.04 | 29.41 |
| CDX94141 | Canola | nucleus | 17.71 | 28.1 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078JPQ5 | UniProt:A0A078JPQ5 | EnsemblPlants:CDY68754 | ProteinID:CDY68754 |
| ProteinID:CDY68754.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00077589001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDF058 | : | : |
Description
BnaAnng28250DBnaAnng28250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JPQ5]
Coordinates
chrLK037897:+:1515..3905
Molecular Weight (calculated)
22488.6 Da
IEP (calculated)
10.206
GRAVY (calculated)
-0.516
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKIQIKK IENTTSRQVT FSKRRKGLFK KAHELSVLCD AQVAAIIFSQ KGRLYDFASS DIQKTIKRYA EYKTEYFVAE SHPMEQYVQG LKKEMVTMVE
101: KIEMLEVHNR KLMGQNLASC SVKELQEIAT QIEKSLHIVR SRKAKLYGDE IEKLKAKERE LKDERVRLFN IIIYIKEDVE TDLVIGFPKS RR
101: KIEMLEVHNR KLMGQNLASC SVKELQEIAT QIEKSLHIVR SRKAKLYGDE IEKLKAKERE LKDERVRLFN IIIYIKEDVE TDLVIGFPKS RR
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
Arabidopsis Description
AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.