Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013891.1-P | Field mustard | nucleus | 84.55 | 98.41 |
| CDX94444 | Canola | nucleus | 96.82 | 97.26 |
| CDY00504 | Canola | nucleus | 25.0 | 90.16 |
| CDY52354 | Canola | nucleus | 81.36 | 81.74 |
| CDY66015 | Canola | nucleus | 79.55 | 79.91 |
| Solyc06g035570.1.1 | Tomato | nucleus | 18.64 | 75.93 |
| CDY56935 | Canola | nucleus | 65.0 | 70.1 |
| CDY42874 | Canola | nucleus | 72.27 | 69.74 |
| CDY02145 | Canola | nucleus | 64.09 | 66.82 |
| CDY10829 | Canola | nucleus | 20.91 | 66.67 |
| CDY41268 | Canola | nucleus | 20.91 | 66.67 |
| CDY68754 | Canola | nucleus | 57.73 | 66.15 |
| VIT_16s0022g02400.t01 | Wine grape | nucleus | 22.73 | 63.29 |
| CDY38881 | Canola | nucleus | 56.36 | 60.78 |
| CDY32614 | Canola | nucleus | 30.0 | 59.46 |
| CDY00505 | Canola | nucleus | 54.55 | 55.05 |
| CDY30701 | Canola | nucleus | 50.0 | 52.63 |
| CDY32613 | Canola | nucleus | 51.82 | 52.05 |
| CDY38882 | Canola | nucleus | 51.82 | 52.05 |
| CDY16792 | Canola | nucleus | 45.45 | 51.81 |
| CDY51028 | Canola | nucleus | 53.18 | 50.65 |
| Os03t0834466-00 | Rice | nucleus | 14.55 | 49.23 |
| CDY51029 | Canola | nucleus | 39.55 | 48.07 |
| PGSC0003DMT400062319 | Potato | nucleus | 25.91 | 47.9 |
| PGSC0003DMT400065060 | Potato | nucleus | 23.64 | 46.85 |
| CDY37054 | Canola | nucleus | 44.55 | 46.01 |
| KRH35396 | Soybean | nucleus | 44.55 | 45.79 |
| CDY27368 | Canola | nucleus | 43.64 | 45.07 |
| KRG91427 | Soybean | nucleus | 43.64 | 44.86 |
| CDY68007 | Canola | nucleus | 30.45 | 44.67 |
| CDX74755 | Canola | nucleus | 42.73 | 44.13 |
| CDY69077 | Canola | nucleus | 42.73 | 44.13 |
| Solyc03g006830.2.1 | Tomato | nucleus | 44.09 | 43.69 |
| GSMUA_Achr11P... | Banana | nucleus | 40.91 | 43.27 |
| CDY53886 | Canola | nucleus | 41.82 | 43.19 |
| CDY60689 | Canola | nucleus | 40.91 | 42.25 |
| GSMUA_Achr10P... | Banana | nucleus | 38.64 | 42.08 |
| CDX98780 | Canola | nucleus | 40.91 | 41.1 |
| Os01t0903800-00 | Rice | cytosol, nucleus | 13.18 | 40.85 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 39.09 | 40.38 |
| CDY55821 | Canola | nucleus | 40.0 | 39.82 |
| CDX76346 | Canola | nucleus | 40.0 | 39.82 |
| CDY13289 | Canola | nucleus | 39.09 | 39.63 |
| CDX86738 | Canola | nucleus | 39.09 | 39.09 |
| CDY41269 | Canola | nucleus | 21.36 | 27.65 |
| CDY10828 | Canola | nucleus | 20.91 | 27.06 |
| CDX94141 | Canola | nucleus | 13.18 | 23.97 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078IVV5 | UniProt:A0A078IVV5 | EnsemblPlants:CDY55721 | ProteinID:CDY55721 |
| ProteinID:CDY55721.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00017223001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EDE47B | SEG:seg | : |
Description
BnaA01g35210DBnaA01g35210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVV5]
Coordinates
chrLK033423:+:20989..25528
Molecular Weight (calculated)
25702.2 Da
IEP (calculated)
8.724
GRAVY (calculated)
-0.671
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKGKIEIKR IENLTSRQVT FSKRRKGLFK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS DMQKMMERCE IHRNEYFGEE NLRKQQYVQE LKNEMVIMAD
101: KIELLRLHSR RLMGQDLDSC SVEELNEIIS KIEKSLTNVR SRKAKLNEDK IEKLKEEIAK EKEVFNEGSR LRQMFEAQPL WMQSRSLKSE KSAPSCDCGN
201: MNISDVETEL FIGLRPESQM
101: KIELLRLHSR RLMGQDLDSC SVEELNEIIS KIEKSLTNVR SRKAKLNEDK IEKLKEEIAK EKEVFNEGSR LRQMFEAQPL WMQSRSLKSE KSAPSCDCGN
201: MNISDVETEL FIGLRPESQM
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAMIFSQ KGRLYEFASS DIRNTIKRYA EYKREYFVAE THPIEQYVQG LKKEMVTMVK
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
101: KIEVLEVHNR KMMGQSLDSC SVKELSEIAT QIEKSLHMVR LRKAKLYEDE LQKLKAKERE LKDERVRLSL KKTIYTHLCQ VGERPMGMPS GSKEKEDVET
201: DLFIGFLKNR P
Arabidopsis Description
AGL72MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.