Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400085623 | Potato | nucleus | 72.32 | 64.0 |
| PGSC0003DMT400094113 | Potato | cytosol | 59.32 | 60.69 |
| PGSC0003DMT400094378 | Potato | nucleus | 52.54 | 59.62 |
| PGSC0003DMT400086919 | Potato | nucleus | 72.32 | 52.03 |
| PGSC0003DMT400095062 | Potato | nucleus | 72.32 | 45.39 |
| PGSC0003DMT400089787 | Potato | cytosol | 43.5 | 44.25 |
| PGSC0003DMT400088654 | Potato | nucleus | 73.45 | 39.76 |
| PGSC0003DMT400090953 | Potato | nucleus | 72.88 | 38.39 |
| PGSC0003DMT400095755 | Potato | nucleus | 74.01 | 38.08 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 72.88 | 36.96 |
| PGSC0003DMT400087890 | Potato | cytosol | 23.16 | 36.61 |
| PGSC0003DMT400003073 | Potato | cytosol | 22.03 | 36.11 |
| PGSC0003DMT400095417 | Potato | cytosol | 22.6 | 31.25 |
| PGSC0003DMT400088008 | Potato | nucleus | 31.07 | 28.5 |
| PGSC0003DMT400091650 | Potato | nucleus | 38.98 | 26.64 |
| PGSC0003DMT400086447 | Potato | cytosol | 26.55 | 24.48 |
| PGSC0003DMT400073719 | Potato | nucleus | 33.33 | 22.61 |
| PGSC0003DMT400085256 | Potato | nucleus | 48.02 | 22.49 |
| PGSC0003DMT400077258 | Potato | nucleus | 46.89 | 21.28 |
| PGSC0003DMT400086956 | Potato | nucleus | 16.38 | 19.73 |
| PGSC0003DMT400090586 | Potato | nucleus | 25.42 | 19.15 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 29.38 | 18.44 |
| PGSC0003DMT400089454 | Potato | nucleus | 25.42 | 18.37 |
| PGSC0003DMT400089615 | Potato | cytosol | 23.16 | 17.23 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 36.72 | 16.97 |
| PGSC0003DMT400061726 | Potato | nucleus | 31.07 | 16.82 |
| PGSC0003DMT400088489 | Potato | nucleus | 19.77 | 16.43 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 18.64 | 14.22 |
| PGSC0003DMT400061722 | Potato | plastid | 7.91 | 13.46 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 16.95 | 13.1 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 17.51 | 12.86 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 17.51 | 12.86 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 16.95 | 12.71 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 15.82 | 12.67 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 15.82 | 12.33 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 15.82 | 12.33 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 16.95 | 12.24 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 11.3 | 12.2 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 18.64 | 11.87 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 15.82 | 11.86 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 16.38 | 11.84 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 14.69 | 11.45 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 14.69 | 11.45 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 15.82 | 11.43 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 11.86 | 11.35 |
| EES06917 | Sorghum | mitochondrion, nucleus | 16.38 | 11.2 |
| GSMUA_AchrUn_... | Banana | nucleus | 14.69 | 11.16 |
| KXG38099 | Sorghum | plastid | 19.77 | 11.11 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 16.38 | 11.11 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 16.38 | 11.11 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 14.69 | 11.11 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 11.86 | 10.99 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 11.86 | 10.99 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 12.43 | 10.95 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 14.12 | 10.87 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 11.3 | 10.81 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 14.12 | 10.78 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 15.82 | 10.77 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 11.86 | 10.77 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 14.12 | 10.68 |
| TraesCS7D01G548500.1 | Wheat | plastid | 14.12 | 10.64 |
| Os03t0582400-01 | Rice | nucleus | 14.69 | 10.44 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 12.43 | 10.43 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 14.12 | 10.37 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 14.12 | 10.37 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 14.12 | 10.37 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 14.69 | 10.36 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 10.73 | 10.27 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 6.78 | 10.26 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 9.04 | 10.26 |
| EES10067 | Sorghum | mitochondrion | 11.86 | 10.19 |
| KXG28893 | Sorghum | nucleus | 9.6 | 10.12 |
| PGSC0003DMT400065010 | Potato | vacuole | 11.3 | 10.0 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 14.69 | 9.96 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 11.86 | 9.95 |
| Zm00001d016791_P001 | Maize | mitochondrion | 15.82 | 9.76 |
| KXG28892 | Sorghum | nucleus | 10.17 | 9.73 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 13.56 | 9.68 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 10.17 | 9.57 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 13.56 | 9.56 |
| EER91288 | Sorghum | mitochondrion, nucleus | 16.95 | 9.55 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 10.73 | 9.55 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 10.17 | 9.47 |
| Bra024521.1-P | Field mustard | mitochondrion | 8.47 | 9.26 |
| CDY04801 | Canola | mitochondrion, nucleus | 8.47 | 9.26 |
| CDY21372 | Canola | mitochondrion | 8.47 | 9.26 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 11.86 | 9.25 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 9.6 | 9.24 |
| PGSC0003DMT400091747 | Potato | plastid | 7.91 | 9.21 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 8.47 | 9.2 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 15.82 | 9.12 |
| KXG32310 | Sorghum | nucleus | 12.43 | 9.09 |
| KXG28888 | Sorghum | nucleus | 12.99 | 9.02 |
| KXG28890 | Sorghum | mitochondrion | 12.99 | 9.02 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 15.25 | 8.74 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 15.25 | 8.71 |
| OQU83804 | Sorghum | mitochondrion | 11.3 | 8.51 |
| Zm00001d048894_P001 | Maize | mitochondrion | 11.86 | 8.5 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 10.17 | 8.49 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 14.69 | 8.31 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 9.6 | 8.29 |
| Bra012335.1-P | Field mustard | mitochondrion | 7.34 | 8.02 |
| CDY25744 | Canola | mitochondrion | 7.34 | 8.02 |
| KXG28889 | Sorghum | nucleus | 11.3 | 8.0 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 14.12 | 7.99 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 15.25 | 7.58 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 12.99 | 7.14 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 12.99 | 7.12 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 12.99 | 7.12 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 14.12 | 6.89 |
| OQU83806 | Sorghum | nucleus | 6.78 | 6.86 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 12.43 | 6.63 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 1.13 | 2.35 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400090516 | EnsemblPlantsGene:PGSC0003DMG400040087 | ncoils:Coil | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 | PGSC:PGSC0003DMG400040087 |
| UniParc:UPI00029606B9 | UniProt:M1DKK1 | MapMan:35.2 | : | : | : |
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400040087]
Coordinates
chr5:+:39171008..39171541
Molecular Weight (calculated)
20477.5 Da
IEP (calculated)
7.386
GRAVY (calculated)
-0.328
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTREEFTMQ RIKKLEEQLQ KVRKENRVRE MTNEMYEVFK RKHIFVDMNP SDLNDLCCVT KKYLKHVREL MIKEADGEGS TSNSPQLIVE PMVPSRNYSE
101: GQRDPSPLLF SQMFPPMVPQ LFSPMPQRMD VGKPPGLTPP MPSTIMDSLI PSPMMDSLLT YHIVLLFLCC STGMMML
101: GQRDPSPLLF SQMFPPMVPQ LFSPMPQRMD VGKPPGLTPP MPSTIMDSLI PSPMMDSLLT YHIVLLFLCC STGMMML
001: MDQEAFLREK IEKAQAQLQK LRDENRVMKA RKIMWGCIEG NINVCQLGEK DLKDLSSVID DYLNSLKSRV EYLKKNGESS SSLPPRVVPY LNVEEDADVP
101: SMDGSHH
101: SMDGSHH
Arabidopsis Description
MADS-box family protein [Source:UniProtKB/TrEMBL;Acc:Q3E8P4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.