Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68270 | Canola | cytosol, nucleus, plastid | 67.61 | 67.92 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 67.14 | 67.45 |
| AT1G72350.1 | Thale cress | nucleus | 64.79 | 61.61 |
| CDX81816 | Canola | nucleus | 46.48 | 48.06 |
| CDY21751 | Canola | nucleus | 45.54 | 47.09 |
| CDY36151 | Canola | nucleus | 17.37 | 42.05 |
| Os06t0504100-00 | Rice | mitochondrion | 30.05 | 30.48 |
| TraesCS1B01G080200.1 | Wheat | nucleus | 25.35 | 30.34 |
| Os12t0407000-00 | Rice | mitochondrion | 26.76 | 29.38 |
| TraesCS1D01G062500.1 | Wheat | nucleus | 24.41 | 28.73 |
| GSMUA_Achr4P11900_001 | Banana | nucleus | 19.25 | 28.08 |
| TraesCS7D01G337200.1 | Wheat | plastid | 24.88 | 27.46 |
| CDY71457 | Canola | nucleus | 15.96 | 27.42 |
| HORVU7Hr1G081190.1 | Barley | nucleus | 19.25 | 27.33 |
| KXG20143 | Sorghum | nucleus | 23.47 | 27.17 |
| TraesCS7B01G240500.1 | Wheat | plastid | 24.41 | 26.94 |
| TraesCS7A01G342300.1 | Wheat | plastid | 24.88 | 26.9 |
| TraesCS1A01G061800.1 | Wheat | nucleus | 21.6 | 26.9 |
| CDY69485 | Canola | nucleus | 15.49 | 26.61 |
| TraesCS5B01G471900.1 | Wheat | mitochondrion | 21.6 | 26.59 |
| TraesCS5D01G474300.1 | Wheat | mitochondrion, nucleus, plastid | 21.6 | 26.59 |
| TraesCS1A01G013100.1 | Wheat | nucleus | 23.47 | 26.45 |
| TraesCS7A01G342600.1 | Wheat | nucleus, plastid | 24.41 | 26.4 |
| Zm00001d007891_P001 | Maize | nucleus | 23.47 | 26.04 |
| Zm00001d042550_P001 | Maize | nucleus | 22.54 | 25.53 |
| TraesCS7B01G240400.1 | Wheat | plastid | 23.47 | 25.51 |
| KXG21744 | Sorghum | nucleus | 23.47 | 25.13 |
| TraesCS7B01G211300.1 | Wheat | plastid | 23.0 | 25.0 |
| TraesCS7D01G337000.1 | Wheat | plastid | 23.0 | 25.0 |
| HORVU5Hr1G110410.2 | Barley | nucleus | 22.07 | 24.23 |
| CDX81713 | Canola | nucleus | 18.31 | 24.07 |
| CDY55987 | Canola | nucleus | 18.78 | 23.81 |
| VIT_10s0003g03970.t01 | Wine grape | nucleus | 23.0 | 23.33 |
| VIT_07s0005g06590.t01 | Wine grape | nucleus | 23.0 | 23.33 |
| CDX74094 | Canola | nucleus | 19.25 | 22.91 |
| EER89159 | Sorghum | nucleus | 23.94 | 22.27 |
| EER88419 | Sorghum | nucleus | 22.07 | 21.86 |
| CDY57614 | Canola | nucleus | 18.31 | 21.79 |
| CDX99867 | Canola | nucleus | 19.25 | 21.13 |
| CDY26304 | Canola | nucleus | 17.84 | 20.54 |
| Zm00001d046054_P001 | Maize | mitochondrion, plastid | 23.47 | 20.33 |
| Zm00001d046053_P001 | Maize | mitochondrion, plastid | 23.47 | 20.33 |
| PGSC0003DMT400002920 | Potato | nucleus | 16.43 | 19.89 |
| HORVU7Hr1G081070.1 | Barley | mitochondrion, nucleus | 24.88 | 19.85 |
| HORVU5Hr1G110470.1 | Barley | plastid | 22.54 | 19.35 |
| Solyc11g069770.1.1 | Tomato | nucleus | 15.49 | 18.23 |
| CDY04574 | Canola | nucleus | 20.19 | 18.07 |
| KRH47706 | Soybean | nucleus | 21.6 | 18.04 |
| CDY24623 | Canola | nucleus | 23.47 | 17.67 |
| CDY31718 | Canola | nucleus | 19.72 | 17.57 |
| CDY09199 | Canola | nucleus | 20.19 | 17.34 |
| CDX95426 | Canola | nucleus | 22.07 | 17.03 |
| CDY42198 | Canola | nucleus | 22.07 | 17.03 |
| KRH06269 | Soybean | nucleus | 20.19 | 16.93 |
| CDY15761 | Canola | nucleus | 17.37 | 16.59 |
| CDY28567 | Canola | mitochondrion, nucleus | 19.25 | 16.53 |
| CDY31547 | Canola | nucleus | 21.6 | 16.49 |
| CDY09204 | Canola | nucleus | 19.25 | 16.47 |
| CDY61930 | Canola | nucleus | 21.13 | 16.13 |
| CDY46165 | Canola | nucleus | 21.13 | 15.9 |
| KRH47704 | Soybean | nucleus | 21.13 | 15.68 |
| CDY45604 | Canola | cytosol | 4.23 | 15.52 |
| CDY36150 | Canola | cytosol | 4.23 | 15.52 |
| KRH47701 | Soybean | nucleus | 20.66 | 15.49 |
| CDY09205 | Canola | nucleus | 17.84 | 13.52 |
| CDX76788 | Canola | cytosol | 6.1 | 11.5 |
| CDY34751 | Canola | cytosol | 6.1 | 11.5 |
| CDY51695 | Canola | cytosol | 7.04 | 7.65 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078CD39 | EnsemblPlants:CDX72908 | ProteinID:CDX72908 | ProteinID:CDX72908.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00103329001 | InterPro:IPR002100 | InterPro:IPR036879 | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0004EDBA22 | SEG:seg | : | : | : | : |
Description
BnaC06g33560D
Coordinates
chrLK031797:-:1082431..1083072
Molecular Weight (calculated)
24193.7 Da
IEP (calculated)
6.086
GRAVY (calculated)
-0.720
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDGERSSTT CLPLKEEKLQ QNPKTTKGRQ KIEIKQINEE SKRQVTFSKR RTGLFKKAAE LSVLCGAQIG IITFSRRGRI YTFGNADALV ENYLRRTPVM
101: LRSHPGGDMA NEGEEVGGLK WWERTVESVP EEEMEEYMTA LSGLRDNLWT RICQLGGDRT VQMNAPVFQN QMAEIEWKLT DENVTVRNDQ GQAGDDGYLD
201: VAAGTFLSQI RKR
101: LRSHPGGDMA NEGEEVGGLK WWERTVESVP EEEMEEYMTA LSGLRDNLWT RICQLGGDRT VQMNAPVFQN QMAEIEWKLT DENVTVRNDQ GQAGDDGYLD
201: VAAGTFLSQI RKR
001: MEDGEASTIT FLPTTEPKPL QNPNLLAKPK KETKQKKPKT TKGRQKIEIK EIMLETRRQV TFSKRRSGLF KKAAELSVLC GAQIGIITFS RCDRIYSFGN
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
101: VNSLIDKYLR KAPVMLRSHP GGNVANGEED NDGLMWWERA VESVPEEHME EYKNALSVLR ENLLTRIYQM SGDRTVENLP AFPNEMAMAD WKLTNENLMA
201: RNDRGYGGNN GDLEFAFMPQ NGRQ
Arabidopsis Description
At1g72350 [Source:UniProtKB/TrEMBL;Acc:Q9C9D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.