Factsheet for Os06t0504100-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0407000-00	Rice	mitochondrion	54.76	59.28
TraesCS5B01G471900.1	Wheat	mitochondrion	48.1	58.38
TraesCS5D01G474300.1	Wheat	mitochondrion, nucleus, plastid	47.14	57.23
TraesCS1D01G062500.1	Wheat	nucleus	45.71	53.04
TraesCS1B01G080200.1	Wheat	nucleus	44.76	52.81
HORVU5Hr1G110410.2	Barley	nucleus	47.14	51.03
TraesCS7D01G337200.1	Wheat	plastid	46.19	50.26
KXG20143	Sorghum	nucleus	43.81	50.0
HORVU7Hr1G081190.1	Barley	nucleus	35.71	50.0
TraesCS1A01G061800.1	Wheat	nucleus	40.48	49.71
Zm00001d007891_P001	Maize	nucleus	44.76	48.96
TraesCS7B01G240500.1	Wheat	plastid	44.76	48.7
Zm00001d042550_P001	Maize	nucleus	43.33	48.4
TraesCS7B01G240400.1	Wheat	plastid	44.76	47.96
TraesCS7A01G342600.1	Wheat	nucleus, plastid	44.76	47.72
Os09t0402533-00	Rice	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	13.81	47.54
TraesCS7B01G211300.1	Wheat	plastid	44.29	47.45
TraesCS7A01G342300.1	Wheat	plastid	44.29	47.21
TraesCS7D01G337000.1	Wheat	plastid	43.33	46.43
KXG21744	Sorghum	nucleus	42.86	45.23
EER88419	Sorghum	nucleus	44.29	43.26
HORVU5Hr1G110470.1	Barley	plastid	48.1	40.73
EER89159	Sorghum	nucleus	42.86	39.3
Zm00001d046054_P001	Maize	mitochondrion, plastid	44.29	37.8
Zm00001d046053_P001	Maize	mitochondrion, plastid	44.29	37.8
Os01t0975800-00	Rice	nucleus	34.76	35.1
HORVU7Hr1G081070.1	Barley	mitochondrion, nucleus	44.29	34.83
GSMUA_Achr4P11900_001	Banana	nucleus	23.81	34.25
Os09t0116800-00	Rice	mitochondrion	33.33	33.33
Bra026674.1-P	Field mustard	nucleus	30.0	30.58
CDY21751	Canola	nucleus	29.52	30.1
CDX72908	Canola	nucleus	30.48	30.05
CDX81816	Canola	nucleus	29.05	29.61
CDX68270	Canola	cytosol, nucleus, plastid	27.14	26.89
CDY50644	Canola	cytosol, mitochondrion, nucleus	27.14	26.89
AT1G17310.2	Thale cress	nucleus	29.05	26.75
Bra003884.1-P	Field mustard	cytosol	26.67	26.42
Solyc11g069770.1.1	Tomato	nucleus	22.38	25.97
VIT_10s0003g03970.t01	Wine grape	nucleus	25.71	25.71
VIT_07s0005g06590.t01	Wine grape	nucleus	25.71	25.71
AT1G72350.1	Thale cress	nucleus	26.19	24.55
PGSC0003DMT400002920	Potato	nucleus	18.57	22.16
KRH47706	Soybean	nucleus	26.19	21.57
KRH06269	Soybean	nucleus	24.76	20.47
KRH47701	Soybean	nucleus	27.62	20.42
KRH47704	Soybean	nucleus	26.67	19.51

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:BAD45640.1	ProteinID:BAS97942.1	ncoils:Coil	ProteinID:EAZ37136.1
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlantsGene:Os06g0504100	EnsemblPlants:Os06t0504100-00
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF339	UniProt:Q654X7
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000043A365	SEG:seg

Description

MADS BOX GENE 75Similar to SRF-type transcription factor family protein, expressed. (Os06t0504100-00)

Coordinates

chr6:-:17869243..17869929

Molecular Weight (calculated)

22762.6 Da

IEP (calculated)

4.795

GRAVY (calculated)

-0.451

Length

210 amino acids

Sequence
(BLAST)

001: MVRSRGRPSL GRQRIEIRRI DNSGRRQVTF SKRRNGLFKK ASELSTLCGA SVAVVAFSSA GNVFAFGQPT VDAVVRRFDP LHADGADPAP AAVEDGGGGG
101: DDVVVADPEE LDALRRAEEQ TKAQVAAEQA RMRDVGDKVT QAMAGRALWW EADVEALGEA ELPEFVRALE RLRDSVHRHA STLASTATPL PPPPEQEEEV
201: PELDVSDYSF

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.