Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026674.1-P Field mustard nucleus 96.6 96.6
CDY21751 Canola nucleus 96.12 96.12
AT1G17310.2 Thale cress nucleus 69.9 63.16
CDX68270 Canola cytosol, nucleus, plastid 48.06 46.7
CDX72908 Canola nucleus 48.06 46.48
CDY50644 Canola cytosol, mitochondrion, nucleus 47.57 46.23
CDY36151 Canola nucleus 16.99 39.77
GSMUA_Achr4P11900_001 Banana nucleus 23.3 32.88
Os12t0407000-00 Rice mitochondrion 30.1 31.96
Os06t0504100-00 Rice mitochondrion 29.61 29.05
TraesCS1B01G080200.1 Wheat nucleus 24.27 28.09
TraesCS5B01G471900.1 Wheat mitochondrion 23.3 27.75
CDY71457 Canola nucleus 16.02 26.61
TraesCS5D01G474300.1 Wheat mitochondrion, nucleus, plastid 22.33 26.59
TraesCS1D01G062500.1 Wheat nucleus 23.3 26.52
Zm00001d007891_P001 Maize nucleus 24.27 26.04
CDY69485 Canola nucleus 15.53 25.81
KXG21744 Sorghum nucleus 24.76 25.63
KXG20143 Sorghum nucleus 22.82 25.54
Zm00001d042550_P001 Maize nucleus 23.3 25.53
TraesCS1A01G013100.1 Wheat nucleus 23.3 25.4
TraesCS7D01G337200.1 Wheat plastid 23.79 25.39
TraesCS7A01G342300.1 Wheat plastid 23.79 24.87
TraesCS7B01G240500.1 Wheat plastid 23.3 24.87
HORVU5Hr1G110410.2 Barley nucleus 23.3 24.74
HORVU7Hr1G081190.1 Barley nucleus 17.96 24.67
EER88419 Sorghum nucleus 25.73 24.65
TraesCS7A01G342600.1 Wheat nucleus, plastid 23.3 24.37
CDX81713 Canola nucleus 18.93 24.07
TraesCS7D01G337000.1 Wheat plastid 22.82 23.98
TraesCS7B01G211300.1 Wheat plastid 22.82 23.98
TraesCS1A01G061800.1 Wheat nucleus 19.9 23.98
TraesCS7B01G240400.1 Wheat plastid 22.33 23.47
VIT_07s0005g06590.t01 Wine grape nucleus 23.79 23.33
VIT_10s0003g03970.t01 Wine grape nucleus 23.79 23.33
PGSC0003DMT400002920 Potato nucleus 19.9 23.3
CDY55987 Canola nucleus 18.93 23.21
EER89159 Sorghum nucleus 25.24 22.71
Zm00001d046054_P001 Maize mitochondrion, plastid 26.21 21.95
Zm00001d046053_P001 Maize mitochondrion, plastid 26.21 21.95
Solyc11g069770.1.1 Tomato nucleus 18.93 21.55
CDX74094 Canola nucleus 18.45 21.23
CDY57614 Canola nucleus 17.96 20.67
HORVU5Hr1G110470.1 Barley plastid 23.79 19.76
CDX99867 Canola nucleus 18.45 19.59
CDY26304 Canola nucleus 17.48 19.46
HORVU7Hr1G081070.1 Barley mitochondrion, nucleus 23.79 18.35
CDY61930 Canola nucleus 24.27 17.92
KRH06269 Soybean nucleus 21.84 17.72
CDY31718 Canola nucleus 20.39 17.57
CDY31547 Canola nucleus 23.79 17.56
CDY24623 Canola nucleus 23.79 17.31
KRH47706 Soybean nucleus 21.36 17.25
CDY45604 Canola cytosol 4.85 17.24
CDY36150 Canola cytosol 4.85 17.24
CDX95426 Canola nucleus 22.82 17.03
CDY04574 Canola nucleus 19.42 16.81
CDY46165 Canola nucleus 22.82 16.61
KRH47701 Soybean nucleus 22.82 16.55
CDY42198 Canola nucleus 21.84 16.3
KRH47704 Soybean nucleus 22.33 16.03
CDY28567 Canola mitochondrion, nucleus 18.45 15.32
CDY09199 Canola nucleus 18.45 15.32
CDY09204 Canola nucleus 18.45 15.26
CDY15761 Canola nucleus 16.02 14.8
CDY09205 Canola nucleus 18.93 13.88
CDY34751 Canola cytosol 5.83 10.62
CDX76788 Canola cytosol 5.83 10.62
CDY51695 Canola cytosol 5.34 5.61
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10GO:A0A078CXA8EnsemblPlants:CDX81816ProteinID:CDX81816ProteinID:CDX81816.1
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00136760001InterPro:IPR002100InterPro:IPR036879PFAM:PF00319PRINTS:PR00404PFscan:PS50066
PANTHER:PTHR11945PANTHER:PTHR11945:SF164SMART:SM00432SUPFAM:SSF55455InterPro:TF_MADSboxInterPro:TF_MADSbox_sf
UniParc:UPI0004EE0068SEG:seg::::
Description
BnaC08g37850D
Coordinates
chrLK031826:-:935794..936414
Molecular Weight (calculated)
23456.6 Da
IEP (calculated)
9.942
GRAVY (calculated)
-0.585
Length
206 amino acids
Sequence
(BLAST)
001: MEEVRETLPT TFLKPNEQLQ IPNVLVTQTK KELTKPRNPK TSRGRLKIEI KEIKEDSKRH VTFSKRRRGL FKKAAELSVL TGAKIAVVTF SKCGRIYSFG
101: HVDSLMDKYL RKIPVNLDVY SGGDSAEEGG RPWWERPVES VPEEELEEYI MAMSVLRDKL GKKINDMGSI VPAWPINMMG WKPQMDMQSM GDVTDGVTRC
201: RLGQNG
Best Arabidopsis Sequence Match ( AT1G17310.2 )
(BLAST)
001: MIFSSLPSRL VMKDLFMEGE RETSSMTCLT PKDSVQSPNM LVRQPKKETT TQTPKTTRGR QKIEIKKIEE ETKRQVTFSK RRRGLFKKSA ELSVLTGAKI
101: AVITFSKCDR IYRFGHVDAL IDKYLRKSPV KLEGYSGDNA ADEESRRPWW ERPVESVPEE ELEEYMAALS MLRENIGKKI VAMGNDRTVD MVPAWPINVM
201: GWKPTMDMQK LENLTDGVNR CRVGQNGD
Arabidopsis Description
MADS-box transcription factor family protein [Source:TAIR;Acc:AT1G17310]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.