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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • endoplasmic reticulum 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026764.1-P Field mustard nucleus 96.91 93.45
CDY55987 Canola nucleus 96.91 93.45
CDY36151 Canola nucleus 34.57 63.64
CDY71457 Canola nucleus 29.63 38.71
CDY69485 Canola nucleus 29.63 38.71
PGSC0003DMT400094816 Potato golgi, nucleus, plastid 45.68 33.48
CDY45604 Canola cytosol 11.73 32.76
PGSC0003DMT400094062 Potato nucleus 40.12 31.86
KRH35626 Soybean nucleus 44.44 31.86
VIT_03s0088g00590.t01 Wine grape nucleus 41.98 31.78
KRG91150 Soybean nucleus 43.83 31.42
CDY36150 Canola cytosol 11.11 31.03
VIT_03s0088g00610.t01 Wine grape cytosol 38.89 28.77
CDX74094 Canola nucleus 31.48 28.49
CDY57614 Canola nucleus 31.48 28.49
CDY34751 Canola cytosol 19.14 27.43
CDY28567 Canola mitochondrion, nucleus 41.36 27.02
CDY09204 Canola nucleus 41.36 26.91
CDY09199 Canola nucleus 40.74 26.61
CDX76788 Canola cytosol 18.52 26.55
CDY31547 Canola nucleus 43.83 25.45
CDY46165 Canola nucleus 44.44 25.44
CDY15761 Canola nucleus 34.57 25.11
CDY24623 Canola nucleus 43.83 25.09
CDY31718 Canola nucleus 36.42 24.69
CDY61930 Canola nucleus 41.98 24.37
CDY04574 Canola nucleus 35.19 23.95
CDX95426 Canola nucleus 40.12 23.55
CDY42198 Canola nucleus 39.51 23.19
CDY09205 Canola nucleus 39.51 22.78
CDX99867 Canola nucleus 24.69 20.62
GSMUA_Achr5P01940_001 Banana nucleus 30.25 20.08
CDY26304 Canola nucleus 22.84 20.0
CDX81816 Canola nucleus 24.07 18.93
CDY21751 Canola nucleus 23.46 18.45
CDX72908 Canola nucleus 24.07 18.31
GSMUA_Achr4P28260_001 Banana nucleus 27.78 18.29
CDX68270 Canola cytosol, nucleus, plastid 22.22 16.98
CDY50644 Canola cytosol, mitochondrion, nucleus 22.22 16.98
GSMUA_Achr5P01990_001 Banana nucleus 29.63 13.83
CDY51695 Canola cytosol 16.05 13.27
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10GO:A0A078D323EnsemblPlants:CDX81713ProteinID:CDX81713ProteinID:CDX81713.1
GO:GO:0000977GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944
GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00136639001InterPro:IPR002100InterPro:IPR036879InterPro:MADS_MEF2-likePFAM:PF00319
PRINTS:PR00404PFscan:PS50066PANTHER:PTHR11945PANTHER:PTHR11945:SF185SMART:SM00432SUPFAM:SSF55455
InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI0004EE245FSEG:seg::
Description
BnaC08g38880D
Coordinates
chrLK031826:+:446690..447178
Molecular Weight (calculated)
18431.2 Da
IEP (calculated)
9.393
GRAVY (calculated)
-0.473
Length
162 amino acids
Sequence
(BLAST)
001: MAKIEKESHR QVAFSKRRAG LFKKASELCT LCGVEVAIIV FSPAKKPFSF GHPSVYSVLD RYRNNTSFQQ QSQPMENTAT RSELSLVLSQ VEEEKKKGEK
101: MRKASEMAKW SVDEMSLLQL QEMRYALEEL RNTMVVPPPS YMNPMSTGFS CIYNSSYVHA SS
Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)
001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
Arabidopsis Description
AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.