Factsheet for PGSC0003DMT400094816

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, nucleus

Predictor Summary:

plastid 3
nucleus 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003073
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400089615
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24840.1	PGSC0003DMT400003073	AT1G31630.1	18713950
AT2G24840.1	PGSC0003DMT400089615	AT1G31630.1	18713950
AT2G24840.1	PGSC0003DMT400003073	AT1G65300.1	18713950
AT2G24840.1	PGSC0003DMT400089615	AT1G65300.1	18713950
AT2G24840.1	PGSC0003DMT400003073	AT1G65330.1	18713950
AT2G24840.1	PGSC0003DMT400089615	AT1G65330.1	18713950
AT2G24840.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT2G24840.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT2G24840.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT2G24840.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT2G24840.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT2G24840.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT2G24840.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT2G24840.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT2G24840.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT2G24840.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT2G24840.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT2G24840.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT2G24840.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT2G24840.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT2G24840.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT2G24840.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT2G24840.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT2G24840.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT2G24840.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT2G24840.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT2G24840.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT2G24840.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT2G24840.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106710.1.1	Tomato	nucleus	95.93	95.93
PGSC0003DMT400094062	Potato	nucleus	64.71	70.1
CDY36151	Canola	nucleus	24.43	61.36
VIT_03s0088g00590.t01	Wine grape	nucleus	59.28	61.22
KRG91150	Soybean	nucleus	54.75	53.54
VIT_03s0088g00610.t01	Wine grape	cytosol	52.49	52.97
KRH35626	Soybean	nucleus	53.85	52.65
PGSC0003DMT400013136	Potato	nucleus	45.7	51.27
PGSC0003DMT400086589	Potato	mitochondrion	36.65	48.8
Bra032057.1-P	Field mustard	nucleus	38.01	46.67
CDX81713	Canola	nucleus	33.48	45.68
PGSC0003DMT400091054	Potato	plastid	23.53	45.61
PGSC0003DMT400094942	Potato	nucleus	26.7	45.04
Bra026764.1-P	Field mustard	nucleus	33.48	44.05
CDY55987	Canola	nucleus	33.48	44.05
PGSC0003DMT400091464	Potato	mitochondrion	34.39	43.18
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	32.58	43.11
PGSC0003DMT400085650	Potato	mitochondrion	32.58	42.86
Bra007829.1-P	Field mustard	nucleus	39.37	42.03
PGSC0003DMT400086435	Potato	nucleus	19.91	41.9
PGSC0003DMT400095668	Potato	mitochondrion	23.08	41.8
PGSC0003DMT400090024	Potato	nucleus	32.13	41.52
PGSC0003DMT400090264	Potato	mitochondrion	28.51	41.45
PGSC0003DMT400088636	Potato	mitochondrion	20.36	38.46
PGSC0003DMT400097162	Potato	nucleus	28.05	37.58
PGSC0003DMT400095852	Potato	cytosol	24.89	37.41
PGSC0003DMT400097714	Potato	mitochondrion	24.89	36.67
PGSC0003DMT400094886	Potato	nucleus	29.86	36.67
PGSC0003DMT400093319	Potato	nucleus	29.41	36.52
PGSC0003DMT400090103	Potato	nucleus	29.41	36.52
PGSC0003DMT400095190	Potato	nucleus	29.41	36.11
AT2G24840.1	Thale cress	nucleus	42.99	35.98
PGSC0003DMT400085261	Potato	nucleus	26.7	35.98
PGSC0003DMT400016092	Potato	mitochondrion	31.22	35.03
PGSC0003DMT400092871	Potato	nucleus	22.17	35.0
PGSC0003DMT400095957	Potato	cytosol	20.36	34.88
PGSC0003DMT400091428	Potato	nucleus	27.15	34.88
PGSC0003DMT400088968	Potato	nucleus	16.74	33.64
PGSC0003DMT400095980	Potato	nucleus	26.24	33.53
PGSC0003DMT400093117	Potato	nucleus	27.15	33.33
PGSC0003DMT400091277	Potato	nucleus	27.15	33.33
PGSC0003DMT400097135	Potato	mitochondrion	27.6	32.28
PGSC0003DMT400086619	Potato	nucleus	27.15	32.26
PGSC0003DMT400000210	Potato	nucleus	20.81	32.17
PGSC0003DMT400013105	Potato	nucleus	30.77	31.92
PGSC0003DMT400092385	Potato	mitochondrion	27.6	30.96
PGSC0003DMT400094407	Potato	mitochondrion	29.41	30.81
PGSC0003DMT400087813	Potato	nucleus	25.34	30.77
PGSC0003DMT400002920	Potato	nucleus	24.43	30.68
PGSC0003DMT400093647	Potato	nucleus	19.91	30.56
PGSC0003DMT400063794	Potato	plastid	31.67	30.3
PGSC0003DMT400094024	Potato	golgi, mitochondrion	24.89	30.05
PGSC0003DMT400090655	Potato	cytosol	23.08	29.31
PGSC0003DMT400089966	Potato	cytosol	22.17	28.82
PGSC0003DMT400088611	Potato	nucleus	21.27	28.48
PGSC0003DMT400094043	Potato	cytosol	18.55	27.52
CDY34751	Canola	cytosol	14.03	27.43
CDX76788	Canola	cytosol	14.03	27.43
PGSC0003DMT400088010	Potato	cytosol	19.91	27.33
PGSC0003DMT400089582	Potato	cytosol	19.91	27.33
CDY45604	Canola	cytosol	6.79	25.86
PGSC0003DMT400092448	Potato	plastid	25.79	25.33
GSMUA_Achr5P01940_001	Banana	nucleus	27.15	24.59
GSMUA_Achr4P28260_001	Banana	nucleus	27.15	24.39
CDY36150	Canola	cytosol	6.33	24.14
PGSC0003DMT400097679	Potato	cytosol	13.57	23.44
PGSC0003DMT400027289	Potato	cytosol	13.12	22.48
PGSC0003DMT400097360	Potato	cytosol	12.22	20.45
PGSC0003DMT400092220	Potato	cytosol	11.76	20.31
PGSC0003DMT400086182	Potato	cytosol	11.76	20.31
GSMUA_Achr5P01990_001	Banana	nucleus	31.67	20.17
PGSC0003DMT400095917	Potato	cytosol	11.76	19.7
PGSC0003DMT400090145	Potato	nucleus	13.12	19.21
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	8.6	18.45

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M1DUY3	InterPro:MADS_MEF2-like	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400044387	PGSC:PGSC0003DMG400044387	EnsemblPlants:PGSC0003DMT400094816
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF164	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002965685	SEG:seg	:	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400044387]

Coordinates

chr1:-:83297295..83297960

Molecular Weight (calculated)

25054.1 Da

IEP (calculated)

10.109

GRAVY (calculated)

-0.456

Length

221 amino acids

Sequence
(BLAST)

001: MAKKPSMGRQ KIKIAKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPARKV FSFGHPNVES IIDRFLTRNN SNNNPIANNS VQLVEAHRNA
101: SVRGLNLQLT QILGEVEIEK KRGESLDQMR KTSQSQYWWE APISQLDLQE LEQLKDSMEV LKKNVTNQAN KFMVNETANP SFFCVNGNGI FDNYDIKPPR
201: NMVASNNLHN HNLGFDSAAF F

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.