Factsheet for PGSC0003DMT400094942

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086589	Potato	mitochondrion	91.6	72.29
PGSC0003DMT400091054	Potato	plastid	61.83	71.05
PGSC0003DMT400091464	Potato	mitochondrion	84.73	63.07
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	78.63	61.68
PGSC0003DMT400085650	Potato	mitochondrion	77.1	60.12
PGSC0003DMT400095668	Potato	mitochondrion	55.73	59.84
PGSC0003DMT400095852	Potato	cytosol	65.65	58.5
Solyc04g047870.1.1	Tomato	mitochondrion, nucleus	83.21	57.37
PGSC0003DMT400085261	Potato	nucleus	68.7	54.88
PGSC0003DMT400086435	Potato	nucleus	32.06	40.0
PGSC0003DMT400090264	Potato	mitochondrion	45.04	38.82
PGSC0003DMT400088636	Potato	mitochondrion	33.59	37.61
PGSC0003DMT400097714	Potato	mitochondrion	41.22	36.0
PGSC0003DMT400097162	Potato	nucleus	43.51	34.55
PGSC0003DMT400013136	Potato	nucleus	48.09	31.98
PGSC0003DMT400086619	Potato	nucleus	45.04	31.72
PGSC0003DMT400094024	Potato	golgi, mitochondrion	42.75	30.6
VIT_01s0010g01530.t01	Wine grape	nucleus	45.04	30.41
PGSC0003DMT400092448	Potato	plastid	51.91	30.22
PGSC0003DMT400016092	Potato	mitochondrion	43.51	28.93
PGSC0003DMT400094407	Potato	mitochondrion	44.27	27.49
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	45.04	26.7
PGSC0003DMT400092385	Potato	mitochondrion	39.69	26.4
PGSC0003DMT400088968	Potato	nucleus	22.14	26.36
PGSC0003DMT400097135	Potato	mitochondrion	37.4	25.93
PGSC0003DMT400094062	Potato	nucleus	38.17	24.51
PGSC0003DMT400095957	Potato	cytosol	23.66	24.03
PGSC0003DMT400093647	Potato	nucleus	25.95	23.61
PGSC0003DMT400091428	Potato	nucleus	30.53	23.26
PGSC0003DMT400093117	Potato	nucleus	31.3	22.78
PGSC0003DMT400095190	Potato	nucleus	31.3	22.78
PGSC0003DMT400095980	Potato	nucleus	29.77	22.54
PGSC0003DMT400093319	Potato	nucleus	30.53	22.47
PGSC0003DMT400000210	Potato	nucleus	24.43	22.38
PGSC0003DMT400090024	Potato	nucleus	29.01	22.22
PGSC0003DMT400094886	Potato	nucleus	29.77	21.67
PGSC0003DMT400090103	Potato	nucleus	29.01	21.35
PGSC0003DMT400088611	Potato	nucleus	26.72	21.21
PGSC0003DMT400091277	Potato	nucleus	29.01	21.11
PGSC0003DMT400086182	Potato	cytosol	20.61	21.09
PGSC0003DMT400002920	Potato	nucleus	28.24	21.02
PGSC0003DMT400092871	Potato	nucleus	21.37	20.0
PGSC0003DMT400089966	Potato	cytosol	25.95	20.0
PGSC0003DMT400088010	Potato	cytosol	24.43	19.88
PGSC0003DMT400013105	Potato	nucleus	32.06	19.72
PGSC0003DMT400089582	Potato	cytosol	23.66	19.25
PGSC0003DMT400090655	Potato	cytosol	24.43	18.39
PGSC0003DMT400092220	Potato	cytosol	17.56	17.97
PGSC0003DMT400063794	Potato	plastid	31.3	17.75
GSMUA_Achr4P28260_001	Banana	nucleus	32.06	17.07
PGSC0003DMT400087813	Potato	nucleus	23.66	17.03
GSMUA_Achr5P01940_001	Banana	nucleus	29.77	15.98
PGSC0003DMT400090145	Potato	nucleus	18.32	15.89
PGSC0003DMT400097679	Potato	cytosol	14.5	14.84
PGSC0003DMT400094043	Potato	cytosol	16.79	14.77
PGSC0003DMT400027289	Potato	cytosol	12.98	13.18
PGSC0003DMT400097360	Potato	cytosol	12.21	12.12
PGSC0003DMT400095917	Potato	cytosol	11.45	11.36
GSMUA_Achr5P01990_001	Banana	nucleus	28.24	10.66
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	6.87	8.74

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1DV79	PFAM:PF00319
EnsemblPlantsGene:PGSC0003DMG400044513	PGSC:PGSC0003DMG400044513	EnsemblPlants:PGSC0003DMT400094942	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00029696DC

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400044513]

Coordinates

chr4:+:27753241..27753636

Molecular Weight (calculated)

14995.4 Da

IEP (calculated)

9.867

GRAVY (calculated)

-0.302

Length

131 amino acids

Sequence
(BLAST)

001: MVKMKNVRNL GVTFSKRRAG LFKKACKLCT LCGAEIAYVI FSYDGKVFSF GHPSMDTLVE RYLGRNLPPP NNDVHNQQIV ALREAGILEL NTKLMNLEVV
101: LQMEKNRGES LREIRKRADG VWWQSPIEEL N

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.