Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g033570.1.1 | Tomato | nucleus | 80.77 | 80.77 |
| PGSC0003DMT400092871 | Potato | nucleus | 58.79 | 76.43 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 35.71 | 63.11 |
| PGSC0003DMT400095917 | Potato | cytosol | 38.46 | 53.03 |
| PGSC0003DMT400097360 | Potato | cytosol | 37.91 | 52.27 |
| PGSC0003DMT400095190 | Potato | nucleus | 48.35 | 48.89 |
| PGSC0003DMT400093117 | Potato | nucleus | 47.25 | 47.78 |
| PGSC0003DMT400091428 | Potato | nucleus | 43.41 | 45.93 |
| PGSC0003DMT400093319 | Potato | nucleus | 43.41 | 44.38 |
| PGSC0003DMT400094886 | Potato | nucleus | 43.41 | 43.89 |
| PGSC0003DMT400091277 | Potato | nucleus | 42.86 | 43.33 |
| PGSC0003DMT400090103 | Potato | nucleus | 42.31 | 43.26 |
| PGSC0003DMT400097679 | Potato | cytosol | 29.12 | 41.41 |
| PGSC0003DMT400027289 | Potato | cytosol | 29.12 | 41.09 |
| PGSC0003DMT400088010 | Potato | cytosol | 36.26 | 40.99 |
| PGSC0003DMT400090655 | Potato | cytosol | 39.01 | 40.8 |
| PGSC0003DMT400088611 | Potato | nucleus | 36.26 | 40.0 |
| PGSC0003DMT400089582 | Potato | cytosol | 35.16 | 39.75 |
| PGSC0003DMT400093647 | Potato | nucleus | 31.32 | 39.58 |
| PGSC0003DMT400095980 | Potato | nucleus | 37.36 | 39.31 |
| PGSC0003DMT400089966 | Potato | cytosol | 35.16 | 37.65 |
| PGSC0003DMT400094043 | Potato | cytosol | 30.77 | 37.58 |
| PGSC0003DMT400088968 | Potato | nucleus | 22.53 | 37.27 |
| PGSC0003DMT400095957 | Potato | cytosol | 26.37 | 37.21 |
| PGSC0003DMT400086435 | Potato | nucleus | 14.84 | 25.71 |
| PGSC0003DMT400094816 | Potato | golgi, nucleus, plastid | 30.77 | 25.34 |
| CDX99867 | Canola | nucleus | 26.92 | 25.26 |
| AT1G28460.1 | Thale cress | nucleus | 24.73 | 24.73 |
| PGSC0003DMT400091054 | Potato | plastid | 15.38 | 24.56 |
| PGSC0003DMT400013136 | Potato | nucleus | 26.37 | 24.37 |
| AT1G29962.1 | Thale cress | nucleus | 24.73 | 24.32 |
| PGSC0003DMT400094062 | Potato | nucleus | 26.92 | 24.02 |
| CDY26304 | Canola | nucleus | 24.18 | 23.78 |
| PGSC0003DMT400094942 | Potato | nucleus | 17.03 | 23.66 |
| AT1G28450.1 | Thale cress | nucleus | 23.08 | 22.7 |
| Bra032347.1-P | Field mustard | nucleus | 23.08 | 22.58 |
| PGSC0003DMT400088636 | Potato | mitochondrion | 14.29 | 22.22 |
| PGSC0003DMT400090264 | Potato | mitochondrion | 18.13 | 21.71 |
| PGSC0003DMT400090024 | Potato | nucleus | 20.33 | 21.64 |
| PGSC0003DMT400002920 | Potato | nucleus | 20.88 | 21.59 |
| PGSC0003DMT400095668 | Potato | mitochondrion | 14.29 | 21.31 |
| PGSC0003DMT400063794 | Potato | plastid | 26.92 | 21.21 |
| PGSC0003DMT400086589 | Potato | mitochondrion | 19.23 | 21.08 |
| PGSC0003DMT400091464 | Potato | mitochondrion | 19.23 | 19.89 |
| AT1G54760.1 | Thale cress | nucleus | 17.58 | 19.88 |
| PGSC0003DMT400090556 | Potato | mitochondrion, nucleus, plastid | 18.13 | 19.76 |
| PGSC0003DMT400085650 | Potato | mitochondrion | 18.13 | 19.64 |
| PGSC0003DMT400097162 | Potato | nucleus | 17.58 | 19.39 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 25.82 | 19.26 |
| PGSC0003DMT400013105 | Potato | nucleus | 22.53 | 19.25 |
| PGSC0003DMT400000210 | Potato | nucleus | 14.84 | 18.88 |
| PGSC0003DMT400097714 | Potato | mitochondrion | 15.38 | 18.67 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 24.73 | 18.29 |
| PGSC0003DMT400016092 | Potato | mitochondrion | 19.78 | 18.27 |
| PGSC0003DMT400097135 | Potato | mitochondrion | 18.13 | 17.46 |
| PGSC0003DMT400086619 | Potato | nucleus | 17.58 | 17.2 |
| PGSC0003DMT400094407 | Potato | mitochondrion | 19.23 | 16.59 |
| PGSC0003DMT400085261 | Potato | nucleus | 14.84 | 16.46 |
| PGSC0003DMT400094024 | Potato | golgi, mitochondrion | 16.48 | 16.39 |
| PGSC0003DMT400092385 | Potato | mitochondrion | 17.03 | 15.74 |
| PGSC0003DMT400095852 | Potato | cytosol | 12.64 | 15.65 |
| PGSC0003DMT400092448 | Potato | plastid | 18.13 | 14.67 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 23.63 | 12.39 |
| PGSC0003DMT400090145 | Potato | nucleus | 8.79 | 10.6 |
| PGSC0003DMT400092220 | Potato | cytosol | 6.59 | 9.38 |
| PGSC0003DMT400086182 | Potato | cytosol | 6.59 | 9.38 |
Protein Annotations
| EntrezGene:107059854 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1DEL8 | PFAM:PF00319 |
| EnsemblPlantsGene:PGSC0003DMG400037384 | PGSC:PGSC0003DMG400037384 | EnsemblPlants:PGSC0003DMT400087813 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000296B3DB |
| RefSeq:XP_015162384.1 | : | : | : | : | : |
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400037384]
Coordinates
chr3:-:3660635..3661183
Molecular Weight (calculated)
20643.5 Da
IEP (calculated)
8.451
GRAVY (calculated)
-0.665
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKKTLGRR KIPLEKIEKE GARYSSFSKR RSGLYKKGSK IVREFDVNLG IVLSSPSGKP YSFVHPTTDV VIDHFINPTI ELDLGAQLVA AEARNKVIQS
101: NDRLNEFDAR EKAAKEKIRF MDQMNEARVK CWWESMDQFN AEDITKFEGF MNTAEGFLNV QLKQLEDGAS SSLHSPPKDA DN
101: NDRLNEFDAR EKAAKEKIRF MDQMNEARVK CWWESMDQFN AEDITKFEGF MNTAEGFLNV QLKQLEDGAS SSLHSPPKDA DN
001: MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP NLDSVAERFM REYDDSDSGD EEKSGNYRPK LKRLSERLDL
101: LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH GRIEGQVNHL QASSCLMLLS RK
101: LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH GRIEGQVNHL QASSCLMLLS RK
Arabidopsis Description
AGL29AGL29 [Source:UniProtKB/TrEMBL;Acc:A0A178VU29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.