Factsheet for PGSC0003DMT400013105

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106700.2.1	Tomato	nucleus	94.37	94.37
PGSC0003DMT400063794	Potato	plastid	74.65	68.83
KRH02077	Soybean	nucleus	31.46	37.22
PGSC0003DMT400095668	Potato	mitochondrion	20.66	36.07
KRG91151	Soybean	nucleus	31.46	33.5
PGSC0003DMT400090024	Potato	nucleus	26.29	32.75
PGSC0003DMT400000210	Potato	nucleus	21.6	32.17
PGSC0003DMT400094942	Potato	nucleus	19.72	32.06
PGSC0003DMT400086589	Potato	mitochondrion	24.88	31.93
PGSC0003DMT400094062	Potato	nucleus	30.52	31.86
PGSC0003DMT400086435	Potato	nucleus	15.49	31.43
PGSC0003DMT400090264	Potato	mitochondrion	22.07	30.92
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	31.92	30.77
PGSC0003DMT400091054	Potato	plastid	16.43	30.7
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	23.94	30.54
PGSC0003DMT400091464	Potato	mitochondrion	24.88	30.11
PGSC0003DMT400085650	Potato	mitochondrion	23.47	29.76
PGSC0003DMT400013136	Potato	nucleus	26.29	28.43
PGSC0003DMT400088636	Potato	mitochondrion	15.49	28.21
PGSC0003DMT400097162	Potato	nucleus	21.13	27.27
PGSC0003DMT400092871	Potato	nucleus	17.84	27.14
PGSC0003DMT400097135	Potato	mitochondrion	23.47	26.45
PGSC0003DMT400097714	Potato	mitochondrion	18.31	26.0
PGSC0003DMT400016092	Potato	mitochondrion	23.94	25.89
PGSC0003DMT400094886	Potato	nucleus	21.6	25.56
PGSC0003DMT400091277	Potato	nucleus	21.6	25.56
PGSC0003DMT400088968	Potato	nucleus	13.15	25.45
PGSC0003DMT400093319	Potato	nucleus	21.13	25.28
PGSC0003DMT400095190	Potato	nucleus	21.13	25.0
PGSC0003DMT400089966	Potato	cytosol	19.72	24.71
PGSC0003DMT400093117	Potato	nucleus	20.66	24.44
PGSC0003DMT400095980	Potato	nucleus	19.72	24.28
PGSC0003DMT400092385	Potato	mitochondrion	22.07	23.86
PGSC0003DMT400095957	Potato	cytosol	14.08	23.26
PGSC0003DMT400094407	Potato	mitochondrion	23.0	23.22
PGSC0003DMT400090103	Potato	nucleus	19.25	23.03
PGSC0003DMT400091428	Potato	nucleus	18.31	22.67
PGSC0003DMT400085261	Potato	nucleus	17.37	22.56
PGSC0003DMT400087813	Potato	nucleus	19.25	22.53
PGSC0003DMT400002920	Potato	nucleus	18.31	22.16
PGSC0003DMT400094024	Potato	golgi, mitochondrion	18.78	21.86
PGSC0003DMT400095852	Potato	cytosol	15.02	21.77
PGSC0003DMT400093647	Potato	nucleus	14.55	21.53
PGSC0003DMT400086619	Potato	nucleus	18.31	20.97
PGSC0003DMT400088611	Potato	nucleus	15.02	19.39
PGSC0003DMT400090655	Potato	cytosol	15.49	18.97
PGSC0003DMT400094043	Potato	cytosol	13.15	18.79
PGSC0003DMT400092448	Potato	plastid	19.25	18.22
PGSC0003DMT400088010	Potato	cytosol	13.62	18.01
PGSC0003DMT400089582	Potato	cytosol	13.15	17.39
PGSC0003DMT400095917	Potato	cytosol	9.86	15.91
PGSC0003DMT400097360	Potato	cytosol	9.39	15.15
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	6.57	13.59
PGSC0003DMT400097679	Potato	cytosol	7.98	13.28
PGSC0003DMT400027289	Potato	cytosol	7.98	13.18
PGSC0003DMT400090145	Potato	nucleus	8.92	12.58
PGSC0003DMT400086182	Potato	cytosol	7.51	12.5
PGSC0003DMT400092220	Potato	cytosol	7.04	11.72

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1A2B3	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400005119
PGSC:PGSC0003DMG400005119	EnsemblPlants:PGSC0003DMT400013105	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF157
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000294ABEE	SEG:seg

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005119]

Coordinates

chr1:+:83295937..83296952

Molecular Weight (calculated)

24268.8 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.611

Length

213 amino acids

Sequence
(BLAST)

001: MTTINAVKKT QGRRKIAIKP IDNQNSRHVT FSKRRLGLFK KASELCILSG AEIVILVQSL KRQRLFTFGH PSPDAVIDRY LTGKSSTSGD GDQFNLQQNN
101: QYYSQICRDL ELEKKKKENI EESKMVNNGE FWWNEPIEDM GIEGLEEFMS ALEELKKKVT MRADELSMIN GSSSNSTMKI ARFGAEDQYL NEAIDYCSSI
201: VPFDFNQTGD GQF

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.