Factsheet for PGSC0003DMT400016092

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092385	Potato	mitochondrion	92.89	92.89
PGSC0003DMT400097135	Potato	mitochondrion	72.59	75.66
PGSC0003DMT400090264	Potato	mitochondrion	54.31	70.39
PGSC0003DMT400097162	Potato	nucleus	57.36	68.48
PGSC0003DMT400086182	Potato	cytosol	42.64	65.62
PGSC0003DMT400094407	Potato	mitochondrion	70.05	65.4
PGSC0003DMT400094024	Potato	golgi, mitochondrion	60.41	65.03
Solyc01g060310.1.1	Tomato	nucleus, plastid	45.18	64.03
PGSC0003DMT400086619	Potato	nucleus	60.41	63.98
PGSC0003DMT400097714	Potato	mitochondrion	47.21	62.0
PGSC0003DMT400092220	Potato	cytosol	40.1	61.72
PGSC0003DMT400088636	Potato	mitochondrion	36.55	61.54
PGSC0003DMT400090145	Potato	nucleus	45.18	58.94
PGSC0003DMT400091054	Potato	plastid	26.4	45.61
Solyc01g060300.1.1	Tomato	nucleus	48.73	45.5
PGSC0003DMT400095668	Potato	mitochondrion	27.41	44.26
PGSC0003DMT400086589	Potato	mitochondrion	37.06	43.98
PGSC0003DMT400094942	Potato	nucleus	28.93	43.51
PGSC0003DMT400091464	Potato	mitochondrion	37.06	41.48
PGSC0003DMT400085650	Potato	mitochondrion	35.03	41.07
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	34.01	40.12
PGSC0003DMT400094062	Potato	nucleus	36.55	35.29
PGSC0003DMT400086435	Potato	nucleus	18.27	34.29
KRH60217	Soybean	nucleus	30.46	33.9
KRH41505	Soybean	cytosol, nucleus, plastid	27.41	33.54
PGSC0003DMT400095852	Potato	cytosol	24.87	33.33
PGSC0003DMT400002920	Potato	nucleus	29.44	32.95
AT3G66656.1	Thale cress	nucleus	28.93	32.02
PGSC0003DMT400013136	Potato	nucleus	31.98	31.98
PGSC0003DMT400085261	Potato	nucleus	26.4	31.71
VIT_00s0386g00010.t01	Wine grape	nucleus	32.49	31.53
Bra021910.1-P	Field mustard	nucleus	28.93	31.32
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	35.03	31.22
KRG99424	Soybean	nucleus	27.92	30.22
KRH60216	Soybean	nucleus	27.92	29.73
PGSC0003DMT400000210	Potato	nucleus	21.32	29.37
AT2G34440.1	Thale cress	nucleus	25.38	29.07
Bra001209.1-P	Field mustard	nucleus	26.4	29.05
CDX74094	Canola	nucleus	26.4	29.05
CDY57614	Canola	nucleus	26.4	29.05
KRH45604	Soybean	nucleus	27.41	28.57
KRH41503	Soybean	nucleus	22.84	28.12
PGSC0003DMT400090024	Potato	nucleus	24.37	28.07
PGSC0003DMT400095957	Potato	cytosol	18.27	27.91
PGSC0003DMT400089966	Potato	cytosol	21.83	25.29
PGSC0003DMT400093647	Potato	nucleus	18.27	25.0
PGSC0003DMT400088968	Potato	nucleus	13.71	24.55
PGSC0003DMT400095190	Potato	nucleus	22.34	24.44
PGSC0003DMT400093117	Potato	nucleus	22.34	24.44
PGSC0003DMT400013105	Potato	nucleus	25.89	23.94
PGSC0003DMT400088611	Potato	nucleus	19.8	23.64
PGSC0003DMT400090103	Potato	nucleus	21.32	23.6
PGSC0003DMT400092448	Potato	plastid	26.9	23.56
PGSC0003DMT400095980	Potato	nucleus	20.3	23.12
PGSC0003DMT400093319	Potato	nucleus	20.81	23.03
PGSC0003DMT400092871	Potato	nucleus	16.24	22.86
PGSC0003DMT400094886	Potato	nucleus	20.81	22.78
PGSC0003DMT400063794	Potato	plastid	26.4	22.51
PGSC0003DMT400091277	Potato	nucleus	20.3	22.22
PGSC0003DMT400089582	Potato	cytosol	17.77	21.74
GSMUA_Achr4P28260_001	Banana	nucleus	26.9	21.54
PGSC0003DMT400091428	Potato	nucleus	18.78	21.51
PGSC0003DMT400090655	Potato	cytosol	18.78	21.26
PGSC0003DMT400094043	Potato	cytosol	15.74	20.81
PGSC0003DMT400088010	Potato	cytosol	16.75	20.5
GSMUA_Achr5P01940_001	Banana	nucleus	25.38	20.49
PGSC0003DMT400087813	Potato	nucleus	18.27	19.78
GSMUA_Achr5P01990_001	Banana	nucleus	27.92	15.85
PGSC0003DMT400097679	Potato	cytosol	9.14	14.06
PGSC0003DMT400027289	Potato	cytosol	9.14	13.95
PGSC0003DMT400097360	Potato	cytosol	8.12	12.12
PGSC0003DMT400095917	Potato	cytosol	7.61	11.36
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	4.06	7.77

Protein Annotations

EntrezGene:107062522	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	UniProt:M1A732	InterPro:MADS_MEF2-like	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400006290	PGSC:PGSC0003DMG400006290
EnsemblPlants:PGSC0003DMT400016092	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000294E5D3	RefSeq:XP_015168708.1	SEG:seg

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006290]

Coordinates

chr1:-:60247610..60248203

Molecular Weight (calculated)

21611.6 Da

IEP (calculated)

7.389

GRAVY (calculated)

-0.569

Length

197 amino acids

Sequence
(BLAST)

001: MRRPNGRKKI EIARIQNQTN LQVTFSKRRA GLFKKASELS TLCGANVAIV AFSPSNKVYA CGHPSVESIV DKFVGENPPP DTDDPNPIIV AHQNANIDEI
101: NEKLNKLERS LERERKHGQA LQALRTEPSN EKLSFFDLKI LCESLEAADK KVEKLASQLM ECGIEFPYQT IGSALAPLRA RESTSSDSGE GSSGSGE

Best Arabidopsis Sequence Match ( AT1G65360.1 )
(BLAST)

001: MVKKTLGRRK VEIVKMTKES NLQVTFSKRK AGLFKKASEF CTLCDAKIAM IVFSPAGKVF SFGHPNVDVL LDHFRGCVVG HNNTNLDESY TKLHVQMLNK
101: SYTEVKAEVE KEQKNKQSRA QNERENENAE EWWSKSPLEL NLSQSTCMIR VLKDLKKIVD EKAIQLIHQT NPNFYVGSSS NAAAPATVSG GNISTNQGFF
201: DQNGMTTNPT QTLLFGFDIM NRTPGV

Arabidopsis Description

AGL23Agamous-like MADS-box protein AGL23 [Source:UniProtKB/Swiss-Prot;Acc:O80807]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.