Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089966 | Potato | cytosol | 82.95 | 62.94 |
| PGSC0003DMT400093647 | Potato | nucleus | 51.16 | 45.83 |
| PGSC0003DMT400088611 | Potato | nucleus | 53.49 | 41.82 |
| PGSC0003DMT400094043 | Potato | cytosol | 44.19 | 38.26 |
| PGSC0003DMT400091428 | Potato | nucleus | 46.51 | 34.88 |
| PGSC0003DMT400088968 | Potato | nucleus | 29.46 | 34.55 |
| PGSC0003DMT400092871 | Potato | nucleus | 34.88 | 32.14 |
| PGSC0003DMT400095980 | Potato | nucleus | 41.86 | 31.21 |
| PGSC0003DMT400093319 | Potato | nucleus | 41.09 | 29.78 |
| PGSC0003DMT400095190 | Potato | nucleus | 40.31 | 28.89 |
| PGSC0003DMT400093117 | Potato | nucleus | 39.53 | 28.33 |
| PGSC0003DMT400090103 | Potato | nucleus | 38.76 | 28.09 |
| PGSC0003DMT400094886 | Potato | nucleus | 38.76 | 27.78 |
| PGSC0003DMT400090655 | Potato | cytosol | 37.21 | 27.59 |
| PGSC0003DMT400091277 | Potato | nucleus | 37.98 | 27.22 |
| PGSC0003DMT400087813 | Potato | nucleus | 37.21 | 26.37 |
| PGSC0003DMT400091054 | Potato | plastid | 23.26 | 26.32 |
| PGSC0003DMT400088010 | Potato | cytosol | 32.56 | 26.09 |
| PGSC0003DMT400089582 | Potato | cytosol | 31.78 | 25.47 |
| PGSC0003DMT400095668 | Potato | mitochondrion | 23.26 | 24.59 |
| PGSC0003DMT400094942 | Potato | nucleus | 24.03 | 23.66 |
| PGSC0003DMT400090264 | Potato | mitochondrion | 26.36 | 22.37 |
| PGSC0003DMT400086589 | Potato | mitochondrion | 28.68 | 22.29 |
| PGSC0003DMT400086435 | Potato | nucleus | 17.83 | 21.9 |
| PGSC0003DMT400090556 | Potato | mitochondrion, nucleus, plastid | 27.91 | 21.56 |
| PGSC0003DMT400097714 | Potato | mitochondrion | 24.81 | 21.33 |
| PGSC0003DMT400091464 | Potato | mitochondrion | 27.91 | 20.45 |
| PGSC0003DMT400094816 | Potato | golgi, nucleus, plastid | 34.88 | 20.36 |
| PGSC0003DMT400085650 | Potato | mitochondrion | 26.36 | 20.24 |
| PGSC0003DMT400094062 | Potato | nucleus | 31.78 | 20.1 |
| PGSC0003DMT400097162 | Potato | nucleus | 25.58 | 20.0 |
| PGSC0003DMT400090024 | Potato | nucleus | 26.36 | 19.88 |
| PGSC0003DMT400088636 | Potato | mitochondrion | 17.83 | 19.66 |
| PGSC0003DMT400016092 | Potato | mitochondrion | 27.91 | 18.27 |
| PGSC0003DMT400013136 | Potato | nucleus | 27.91 | 18.27 |
| PGSC0003DMT400085261 | Potato | nucleus | 22.48 | 17.68 |
| PGSC0003DMT400086619 | Potato | nucleus | 24.81 | 17.2 |
| PGSC0003DMT400097679 | Potato | cytosol | 17.05 | 17.19 |
| AT1G28460.1 | Thale cress | nucleus | 24.03 | 17.03 |
| PGSC0003DMT400000210 | Potato | nucleus | 18.6 | 16.78 |
| AT1G29962.1 | Thale cress | nucleus | 24.03 | 16.76 |
| CDY26304 | Canola | nucleus | 24.03 | 16.76 |
| Bra032347.1-P | Field mustard | nucleus | 24.03 | 16.67 |
| CDX99867 | Canola | nucleus | 24.81 | 16.49 |
| PGSC0003DMT400027289 | Potato | cytosol | 16.28 | 16.28 |
| AT1G28450.1 | Thale cress | nucleus | 23.26 | 16.22 |
| PGSC0003DMT400097360 | Potato | cytosol | 16.28 | 15.91 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 30.23 | 15.85 |
| PGSC0003DMT400094024 | Potato | golgi, mitochondrion | 22.48 | 15.85 |
| PGSC0003DMT400092385 | Potato | mitochondrion | 24.03 | 15.74 |
| PGSC0003DMT400097135 | Potato | mitochondrion | 22.48 | 15.34 |
| PGSC0003DMT400002920 | Potato | nucleus | 20.93 | 15.34 |
| PGSC0003DMT400095917 | Potato | cytosol | 15.5 | 15.15 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 27.91 | 14.75 |
| PGSC0003DMT400095852 | Potato | cytosol | 16.28 | 14.29 |
| PGSC0003DMT400094407 | Potato | mitochondrion | 23.26 | 14.22 |
| PGSC0003DMT400013105 | Potato | nucleus | 23.26 | 14.08 |
| PGSC0003DMT400092448 | Potato | plastid | 24.03 | 13.78 |
| PGSC0003DMT400063794 | Potato | plastid | 24.03 | 13.42 |
| AT1G54760.1 | Thale cress | nucleus | 13.95 | 11.18 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 8.53 | 10.68 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 27.91 | 10.37 |
| PGSC0003DMT400086182 | Potato | cytosol | 9.3 | 9.38 |
| PGSC0003DMT400092220 | Potato | cytosol | 8.53 | 8.59 |
| PGSC0003DMT400090145 | Potato | nucleus | 8.53 | 7.28 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1DXE4 | PFAM:PF00319 |
| EnsemblPlantsGene:PGSC0003DMG400045528 | PGSC:PGSC0003DMG400045528 | EnsemblPlants:PGSC0003DMT400095957 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000294C7B2 | SEG:seg |
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400045528]
Coordinates
chr1:-:40043124..40043513
Molecular Weight (calculated)
15116.7 Da
IEP (calculated)
4.459
GRAVY (calculated)
-0.685
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKNTLGHQ KIPMAKIENE DDLYSSFSKH RETLYKKASD MIGKYEIDVG IITFSPSNNP FSFFHPTIDV VVDRFFSLYA QESENSRLNI ANTRIRIKEK
101: QVELDNLEII KETLTNETTD ETSMEEMWE
101: QVELDNLEII KETLTNETTD ETSMEEMWE
001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
Arabidopsis Description
AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.