Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400091277 | Potato | nucleus | 83.33 | 83.33 |
| Solyc06g065960.1.1 | Tomato | nucleus | 37.78 | 74.73 |
| PGSC0003DMT400095190 | Potato | nucleus | 71.67 | 71.67 |
| PGSC0003DMT400088968 | Potato | nucleus | 43.33 | 70.91 |
| PGSC0003DMT400093117 | Potato | nucleus | 68.33 | 68.33 |
| PGSC0003DMT400093319 | Potato | nucleus | 62.22 | 62.92 |
| PGSC0003DMT400097679 | Potato | cytosol | 44.44 | 62.5 |
| PGSC0003DMT400090103 | Potato | nucleus | 61.67 | 62.36 |
| PGSC0003DMT400091428 | Potato | nucleus | 57.22 | 59.88 |
| PGSC0003DMT400027289 | Potato | cytosol | 42.78 | 59.69 |
| PGSC0003DMT400092871 | Potato | nucleus | 37.22 | 47.86 |
| PGSC0003DMT400088010 | Potato | cytosol | 42.22 | 47.2 |
| PGSC0003DMT400090655 | Potato | cytosol | 45.56 | 47.13 |
| PGSC0003DMT400095980 | Potato | nucleus | 45.0 | 46.82 |
| PGSC0003DMT400089582 | Potato | cytosol | 41.67 | 46.58 |
| PGSC0003DMT400093647 | Potato | nucleus | 36.67 | 45.83 |
| PGSC0003DMT400087813 | Potato | nucleus | 43.89 | 43.41 |
| PGSC0003DMT400088611 | Potato | nucleus | 38.89 | 42.42 |
| PGSC0003DMT400097360 | Potato | cytosol | 30.0 | 40.91 |
| PGSC0003DMT400095917 | Potato | cytosol | 29.44 | 40.15 |
| PGSC0003DMT400094043 | Potato | cytosol | 32.22 | 38.93 |
| PGSC0003DMT400095957 | Potato | cytosol | 27.78 | 38.76 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 21.67 | 37.86 |
| PGSC0003DMT400089966 | Potato | cytosol | 32.78 | 34.71 |
| PGSC0003DMT400086435 | Potato | nucleus | 20.0 | 34.29 |
| PGSC0003DMT400091054 | Potato | plastid | 21.11 | 33.33 |
| PGSC0003DMT400095668 | Potato | mitochondrion | 21.11 | 31.15 |
| PGSC0003DMT400094062 | Potato | nucleus | 34.44 | 30.39 |
| PGSC0003DMT400094816 | Potato | golgi, nucleus, plastid | 36.67 | 29.86 |
| PGSC0003DMT400094942 | Potato | nucleus | 21.67 | 29.77 |
| PGSC0003DMT400086589 | Potato | mitochondrion | 26.67 | 28.92 |
| PGSC0003DMT400085650 | Potato | mitochondrion | 25.56 | 27.38 |
| PGSC0003DMT400090556 | Potato | mitochondrion, nucleus, plastid | 25.0 | 26.95 |
| PGSC0003DMT400090024 | Potato | nucleus | 25.0 | 26.32 |
| PGSC0003DMT400091464 | Potato | mitochondrion | 25.56 | 26.14 |
| AT1G28460.1 | Thale cress | nucleus | 25.56 | 25.27 |
| PGSC0003DMT400090264 | Potato | mitochondrion | 21.11 | 25.0 |
| PGSC0003DMT400088636 | Potato | mitochondrion | 16.11 | 24.79 |
| PGSC0003DMT400013136 | Potato | nucleus | 26.67 | 24.37 |
| PGSC0003DMT400097162 | Potato | nucleus | 22.22 | 24.24 |
| AT1G29962.1 | Thale cress | nucleus | 24.44 | 23.78 |
| PGSC0003DMT400000210 | Potato | nucleus | 18.89 | 23.78 |
| AT1G28450.1 | Thale cress | nucleus | 23.33 | 22.7 |
| PGSC0003DMT400097714 | Potato | mitochondrion | 18.89 | 22.67 |
| CDX99867 | Canola | nucleus | 23.89 | 22.16 |
| CDY26304 | Canola | nucleus | 22.78 | 22.16 |
| PGSC0003DMT400063794 | Potato | plastid | 28.33 | 22.08 |
| Bra032347.1-P | Field mustard | nucleus | 22.78 | 22.04 |
| PGSC0003DMT400085261 | Potato | nucleus | 20.0 | 21.95 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 30.0 | 21.95 |
| PGSC0003DMT400013105 | Potato | nucleus | 25.56 | 21.6 |
| PGSC0003DMT400097135 | Potato | mitochondrion | 22.22 | 21.16 |
| PGSC0003DMT400016092 | Potato | mitochondrion | 22.78 | 20.81 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 27.78 | 20.49 |
| PGSC0003DMT400002920 | Potato | nucleus | 20.0 | 20.45 |
| PGSC0003DMT400086619 | Potato | nucleus | 20.56 | 19.89 |
| PGSC0003DMT400095852 | Potato | cytosol | 16.11 | 19.73 |
| PGSC0003DMT400094024 | Potato | golgi, mitochondrion | 19.44 | 19.13 |
| PGSC0003DMT400092385 | Potato | mitochondrion | 19.44 | 17.77 |
| AT1G54760.1 | Thale cress | nucleus | 15.56 | 17.39 |
| PGSC0003DMT400092448 | Potato | plastid | 21.67 | 17.33 |
| PGSC0003DMT400094407 | Potato | mitochondrion | 20.0 | 17.06 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 26.67 | 13.83 |
| PGSC0003DMT400092220 | Potato | cytosol | 7.78 | 10.94 |
| PGSC0003DMT400086182 | Potato | cytosol | 7.78 | 10.94 |
| PGSC0003DMT400090145 | Potato | nucleus | 7.22 | 8.61 |
Protein Annotations
| EntrezGene:102594286 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1DV35 |
| PFAM:PF00319 | EnsemblPlantsGene:PGSC0003DMG400044457 | PGSC:PGSC0003DMG400044457 | EnsemblPlants:PGSC0003DMT400094886 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI000296E813 | RefSeq:XP_006361360.1 | : | : | : | : |
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400044457]
Coordinates
chr12:+:52437112..52437654
Molecular Weight (calculated)
20672.7 Da
IEP (calculated)
7.672
GRAVY (calculated)
-0.639
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKKTKGRQ KIPMKKIENK DAMFATFTKR REGLYKKASE LVTECDVDIG IMMISPAGKP HSFIHPIVDA VISRFQNPNM QLSESTNLEA NVARDEVNQL
101: KNKLKELDVA EDIAIAKSSS YDQMKETRQK GWWESIEQLS ANEVFIFGTW LNETSSNMHH RLNQLEIEVS SSTRYESFGV
101: KNKLKELDVA EDIAIAKSSS YDQMKETRQK GWWESIEQLS ANEVFIFGTW LNETSSNMHH RLNQLEIEVS SSTRYESFGV
001: MKPKKTKGKQ RINIKKIEKD EDRLVTLSKR RNGIYTKLSE LSILCGAEVA FLGYSCSGKP YTFGSPSFQA VAERFLNGEA SSSSSSSLQR SVMNAHQQAK
101: IQELCKVYNR LVEEITVEEV KLKKTAALAE MMPMNEDAWW KVDPNDVKDR EEVKKMMEKH QELYEKLCEE AASRIKRGHD ENNNK
101: IQELCKVYNR LVEEITVEEV KLKKTAALAE MMPMNEDAWW KVDPNDVKDR EEVKKMMEKH QELYEKLCEE AASRIKRGHD ENNNK
Arabidopsis Description
AGL64AGAMOUS-like 64 [Source:UniProtKB/TrEMBL;Acc:Q7XJK9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.