Factsheet for PGSC0003DMT400095852

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086589	Potato	mitochondrion	84.35	74.7
PGSC0003DMT400091464	Potato	mitochondrion	88.44	73.86
PGSC0003DMT400085261	Potato	nucleus	78.23	70.12
PGSC0003DMT400094942	Potato	nucleus	58.5	65.65
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	70.75	62.28
PGSC0003DMT400085650	Potato	mitochondrion	66.67	58.33
PGSC0003DMT400091054	Potato	plastid	40.82	52.63
PGSC0003DMT400095668	Potato	mitochondrion	36.05	43.44
PGSC0003DMT400092448	Potato	plastid	54.42	35.56
PGSC0003DMT400090264	Potato	mitochondrion	31.97	30.92
PGSC0003DMT400086182	Potato	cytosol	24.49	28.12
PGSC0003DMT400013136	Potato	nucleus	37.41	27.92
PGSC0003DMT400097162	Potato	nucleus	31.29	27.88
VIT_01s0010g01530.t01	Wine grape	nucleus	36.73	27.84
PGSC0003DMT400097714	Potato	mitochondrion	27.21	26.67
PGSC0003DMT400086619	Potato	nucleus	31.97	25.27
PGSC0003DMT400092220	Potato	cytosol	21.77	25.0
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	37.41	24.89
PGSC0003DMT400016092	Potato	mitochondrion	33.33	24.87
PGSC0003DMT400094024	Potato	golgi, mitochondrion	30.61	24.59
PGSC0003DMT400094407	Potato	mitochondrion	31.97	22.27
PGSC0003DMT400088636	Potato	mitochondrion	17.69	22.22
PGSC0003DMT400092385	Potato	mitochondrion	29.25	21.83
PGSC0003DMT400097135	Potato	mitochondrion	27.89	21.69
PGSC0003DMT400090145	Potato	nucleus	21.77	21.19
PGSC0003DMT400094062	Potato	nucleus	29.25	21.08
PGSC0003DMT400097679	Potato	cytosol	17.01	19.53
PGSC0003DMT400086435	Potato	nucleus	13.61	19.05
PGSC0003DMT400000210	Potato	nucleus	18.37	18.88
PGSC0003DMT400027289	Potato	cytosol	15.65	17.83
PGSC0003DMT400090024	Potato	nucleus	20.41	17.54
PGSC0003DMT400091428	Potato	nucleus	20.41	17.44
PGSC0003DMT400090103	Potato	nucleus	21.09	17.42
PGSC0003DMT400093319	Potato	nucleus	21.09	17.42
PGSC0003DMT400093647	Potato	nucleus	17.01	17.36
PGSC0003DMT400088010	Potato	cytosol	18.37	16.77
PGSC0003DMT400095980	Potato	nucleus	19.73	16.76
PGSC0003DMT400095190	Potato	nucleus	20.41	16.67
PGSC0003DMT400093117	Potato	nucleus	20.41	16.67
PGSC0003DMT400091277	Potato	nucleus	20.41	16.67
PGSC0003DMT400088968	Potato	nucleus	12.24	16.36
PGSC0003DMT400095957	Potato	cytosol	14.29	16.28
PGSC0003DMT400089582	Potato	cytosol	17.69	16.15
PGSC0003DMT400094886	Potato	nucleus	19.73	16.11
PGSC0003DMT400088611	Potato	nucleus	17.69	15.76
PGSC0003DMT400013105	Potato	nucleus	21.77	15.02
PGSC0003DMT400089966	Potato	cytosol	17.01	14.71
GSMUA_Achr4P28260_001	Banana	nucleus	24.49	14.63
PGSC0003DMT400097360	Potato	cytosol	12.93	14.39
PGSC0003DMT400090655	Potato	cytosol	17.01	14.37
GSMUA_Achr5P01940_001	Banana	nucleus	23.81	14.34
PGSC0003DMT400092871	Potato	nucleus	13.61	14.29
PGSC0003DMT400063794	Potato	plastid	22.45	14.29
PGSC0003DMT400095917	Potato	cytosol	12.24	13.64
PGSC0003DMT400087813	Potato	nucleus	15.65	12.64
PGSC0003DMT400002920	Potato	nucleus	14.29	11.93
GSMUA_Achr5P01990_001	Banana	nucleus	26.53	11.24
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	7.48	10.68
PGSC0003DMT400094043	Potato	cytosol	8.16	8.05

Protein Annotations

EntrezGene:107061922	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M1DX66	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400045423	PGSC:PGSC0003DMG400045423	EnsemblPlants:PGSC0003DMT400095852	PANTHER:PTHR11945
PANTHER:PTHR11945:SF185	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002951D68	RefSeq:XP_015167456.1

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400045423]

Coordinates

chr4:+:28119139..28119582

Molecular Weight (calculated)

16865.4 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.481

Length

147 amino acids

Sequence
(BLAST)

001: MCGAEIAIVI FSQDGKVFSF GHPCVDTLVE RFLGRNLPPP NNDVRNQQIV ARREAGMREL NTKLMNLEEV LQMEKNRGES LREIRKRANG LWWESPMEEL
101: NLFQLQHLKK ALEILKQKVE KEAQMVNNNA FPFQTLGSAW TPPNCAS

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.