Factsheet for VIT_01s0010g01530.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0010g01500.t01	Wine grape	nucleus	38.66	72.82
VIT_03s0088g00600.t01	Wine grape	nucleus	72.68	65.89
VIT_03s0088g00550.t01	Wine grape	nucleus	69.07	62.91
VIT_03s0088g00510.t01	Wine grape	nucleus	65.46	56.7
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	40.21	46.71
PGSC0003DMT400086435	Potato	nucleus	25.26	46.67
PGSC0003DMT400086589	Potato	mitochondrion	39.69	46.39
PGSC0003DMT400085650	Potato	mitochondrion	39.69	45.83
VIT_03s0088g00590.t01	Wine grape	nucleus	50.0	45.33
PGSC0003DMT400094942	Potato	nucleus	30.41	45.04
PGSC0003DMT400091464	Potato	mitochondrion	40.21	44.32
PGSC0003DMT400091054	Potato	plastid	25.77	43.86
VIT_03s0088g00610.t01	Wine grape	cytosol	48.97	43.38
Solyc04g047870.1.1	Tomato	mitochondrion, nucleus	42.27	43.16
PGSC0003DMT400095668	Potato	mitochondrion	26.8	42.62
Solyc01g106730.1.1	Tomato	mitochondrion	46.91	41.18
Solyc04g025110.1.1	Tomato	mitochondrion, nucleus, plastid	25.77	38.46
PGSC0003DMT400085261	Potato	nucleus	31.96	37.8
PGSC0003DMT400095852	Potato	cytosol	27.84	36.73
Solyc04g025030.1.1	Tomato	mitochondrion	24.74	35.56
VIT_00s0386g00010.t01	Wine grape	nucleus	37.11	35.47
VIT_10s0003g03970.t01	Wine grape	nucleus	32.99	30.48
VIT_07s0005g06590.t01	Wine grape	nucleus	32.99	30.48
PGSC0003DMT400092448	Potato	plastid	28.87	24.89
GSMUA_Achr4P28260_001	Banana	nucleus	30.41	23.98
GSMUA_Achr5P01940_001	Banana	nucleus	29.38	23.36
GSMUA_Achr5P01990_001	Banana	nucleus	30.93	17.29

Protein Annotations

EntrezGene:100242809	wikigene:100242809	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AM428626	ProteinID:CAN77992
ProteinID:CAN77992.1	ProteinID:CBI27469	ProteinID:CBI27469.3	ncoils:Coil	UniProt:D7TAE6	EMBL:FN595754
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	EntrezGene:LOC100242809	wikigene:LOC100242809	InterPro:MADS_MEF2-like
PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF164	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00015C9BC1	ArrayExpress:VIT_01s0010g01530	EnsemblPlantsGene:VIT_01s0010g01530
EnsemblPlants:VIT_01s0010g01530.t01	RefSeq:XP_002272514	RefSeq:XP_002272514.1	:	:	:

Description

No Description!

Coordinates

chr1:-:17826902..17827540

Molecular Weight (calculated)

21766.4 Da

IEP (calculated)

9.739

GRAVY (calculated)

-0.295

Length

194 amino acids

Sequence
(BLAST)

001: MATVRKSKGR QRIEIAKIKN ESNLQVTFSK RRAGLFKKAS ELCTLCGAET AIIIFSPGKK IYSFGHPCIE SIIDRFLARN PFLNAGALQL FQAHLEAEKK
101: RGEALDKTTK AFQRQCWWAA PVEELNLEQL QMLKVSLEML RKKVERQADK LIIEASEPPA FSAPYSVGAI PPYEPQTAGF DPQGSTFGFD GHFF

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.