Factsheet for PGSC0003DMT400090556

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400091054	Potato	plastid	54.49	79.82
PGSC0003DMT400094942	Potato	nucleus	61.68	78.63
PGSC0003DMT400085650	Potato	mitochondrion	78.44	77.98
PGSC0003DMT400086589	Potato	mitochondrion	77.25	77.71
PGSC0003DMT400085261	Potato	nucleus	73.05	74.39
PGSC0003DMT400091464	Potato	mitochondrion	75.45	71.59
PGSC0003DMT400095852	Potato	cytosol	62.28	70.75
PGSC0003DMT400095668	Potato	mitochondrion	43.11	59.02
PGSC0003DMT400086435	Potato	nucleus	31.74	50.48
PGSC0003DMT400090264	Potato	mitochondrion	42.52	46.71
PGSC0003DMT400097162	Potato	nucleus	41.92	42.42
PGSC0003DMT400097714	Potato	mitochondrion	37.13	41.33
VIT_01s0010g01530.t01	Wine grape	nucleus	46.71	40.21
PGSC0003DMT400088636	Potato	mitochondrion	26.95	38.46
PGSC0003DMT400092448	Potato	plastid	50.3	37.33
PGSC0003DMT400013136	Potato	nucleus	42.52	36.04
PGSC0003DMT400086619	Potato	nucleus	39.52	35.48
PGSC0003DMT400016092	Potato	mitochondrion	40.12	34.01
PGSC0003DMT400094024	Potato	golgi, mitochondrion	37.13	33.88
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	43.11	32.58
PGSC0003DMT400092385	Potato	mitochondrion	37.72	31.98
PGSC0003DMT400097135	Potato	mitochondrion	34.73	30.69
PGSC0003DMT400094062	Potato	nucleus	37.13	30.39
PGSC0003DMT400094407	Potato	mitochondrion	38.32	30.33
PGSC0003DMT400088968	Potato	nucleus	18.56	28.18
PGSC0003DMT400090024	Potato	nucleus	28.74	28.07
PGSC0003DMT400095957	Potato	cytosol	21.56	27.91
PGSC0003DMT400093319	Potato	nucleus	29.34	27.53
PGSC0003DMT400095190	Potato	nucleus	29.34	27.22
PGSC0003DMT400091428	Potato	nucleus	27.54	26.74
PGSC0003DMT400093117	Potato	nucleus	28.74	26.67
PGSC0003DMT400090103	Potato	nucleus	28.14	26.4
PGSC0003DMT400095980	Potato	nucleus	26.95	26.01
PGSC0003DMT400093647	Potato	nucleus	22.16	25.69
PGSC0003DMT400091277	Potato	nucleus	27.54	25.56
PGSC0003DMT400000210	Potato	nucleus	21.56	25.17
PGSC0003DMT400094886	Potato	nucleus	26.95	25.0
PGSC0003DMT400088611	Potato	nucleus	23.95	24.24
PGSC0003DMT400086182	Potato	cytosol	18.56	24.22
PGSC0003DMT400013105	Potato	nucleus	30.54	23.94
PGSC0003DMT400089966	Potato	cytosol	23.95	23.53
PGSC0003DMT400002920	Potato	nucleus	23.95	22.73
PGSC0003DMT400092871	Potato	nucleus	18.56	22.14
PGSC0003DMT400090655	Potato	cytosol	22.16	21.26
PGSC0003DMT400092220	Potato	cytosol	16.17	21.09
PGSC0003DMT400063794	Potato	plastid	28.74	20.78
GSMUA_Achr4P28260_001	Banana	nucleus	30.54	20.73
GSMUA_Achr5P01940_001	Banana	nucleus	29.94	20.49
PGSC0003DMT400089582	Potato	cytosol	18.56	19.25
PGSC0003DMT400088010	Potato	cytosol	18.56	19.25
PGSC0003DMT400090145	Potato	nucleus	17.37	19.21
PGSC0003DMT400094043	Potato	cytosol	16.77	18.79
PGSC0003DMT400087813	Potato	nucleus	19.76	18.13
PGSC0003DMT400097679	Potato	cytosol	12.57	16.41
PGSC0003DMT400027289	Potato	cytosol	12.57	16.28
PGSC0003DMT400097360	Potato	cytosol	11.38	14.39
GSMUA_Achr5P01990_001	Banana	nucleus	29.34	14.12
PGSC0003DMT400095917	Potato	cytosol	10.78	13.64
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	5.99	9.71

Protein Annotations

EntrezGene:102578802	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1DKN2
PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400040127	PGSC:PGSC0003DMG400040127	EnsemblPlants:PGSC0003DMT400090556	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002960364	RefSeq:XP_006354691.1	:	:	:	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400040127]

Coordinates

chr4:-:28566215..28566718

Molecular Weight (calculated)

19304.7 Da

IEP (calculated)

10.673

GRAVY (calculated)

-0.470

Length

167 amino acids

Sequence
(BLAST)

001: MTTRISKGRQ RVDMVKMKNA RNLQVTFSKR CAGMFKKASE LCTLCGAEIV IVVFSPGDKG FFSFSHPSVN TLVERFLGRN LSPPNNDVHN QQIVARREDG
101: IRELNTKLMN LEGVLQMEKN RGEFLREIWK RANGLWWESP MEELNLFQLQ HLKKAVKILK QKVEKEA

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.