Factsheet for PGSC0003DMT400093117

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095190	Potato	nucleus	87.78	87.78
PGSC0003DMT400027289	Potato	cytosol	61.67	86.05
Solyc04g056740.1.1	Tomato	nucleus	85.56	85.56
PGSC0003DMT400097679	Potato	cytosol	58.33	82.03
PGSC0003DMT400094886	Potato	nucleus	68.33	68.33
PGSC0003DMT400091277	Potato	nucleus	66.67	66.67
PGSC0003DMT400093319	Potato	nucleus	64.44	65.17
PGSC0003DMT400090103	Potato	nucleus	62.78	63.48
PGSC0003DMT400091428	Potato	nucleus	55.56	58.14
PGSC0003DMT400088968	Potato	nucleus	35.0	57.27
PGSC0003DMT400092871	Potato	nucleus	38.33	49.29
PGSC0003DMT400095980	Potato	nucleus	46.11	47.98
PGSC0003DMT400087813	Potato	nucleus	47.78	47.25
PGSC0003DMT400090655	Potato	cytosol	43.89	45.4
PGSC0003DMT400093647	Potato	nucleus	36.11	45.14
PGSC0003DMT400088611	Potato	nucleus	40.0	43.64
PGSC0003DMT400088010	Potato	cytosol	37.22	41.61
PGSC0003DMT400089582	Potato	cytosol	36.67	40.99
PGSC0003DMT400095957	Potato	cytosol	28.33	39.53
PGSC0003DMT400097360	Potato	cytosol	27.78	37.88
PGSC0003DMT400095917	Potato	cytosol	27.78	37.88
PGSC0003DMT400086349	Potato	cytosol, mitochondrion	21.67	37.86
PGSC0003DMT400089966	Potato	cytosol	35.56	37.65
PGSC0003DMT400094043	Potato	cytosol	30.56	36.91
PGSC0003DMT400086435	Potato	nucleus	21.11	36.19
PGSC0003DMT400091054	Potato	plastid	22.22	35.09
PGSC0003DMT400094942	Potato	nucleus	22.78	31.3
PGSC0003DMT400095668	Potato	mitochondrion	21.11	31.15
PGSC0003DMT400086589	Potato	mitochondrion	27.78	30.12
PGSC0003DMT400090556	Potato	mitochondrion, nucleus, plastid	26.67	28.74
PGSC0003DMT400094062	Potato	nucleus	32.22	28.43
PGSC0003DMT400091464	Potato	mitochondrion	26.67	27.27
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	33.33	27.15
PGSC0003DMT400085650	Potato	mitochondrion	25.0	26.79
PGSC0003DMT400090024	Potato	nucleus	25.0	26.32
PGSC0003DMT400090264	Potato	mitochondrion	22.22	26.32
PGSC0003DMT400088636	Potato	mitochondrion	16.67	25.64
CDX99867	Canola	nucleus	26.67	24.74
PGSC0003DMT400013136	Potato	nucleus	26.67	24.37
CDY26304	Canola	nucleus	25.0	24.32
PGSC0003DMT400097162	Potato	nucleus	22.22	24.24
AT1G28460.1	Thale cress	nucleus	24.44	24.18
AT1G29962.1	Thale cress	nucleus	24.44	23.78
PGSC0003DMT400097714	Potato	mitochondrion	19.44	23.33
Bra032347.1-P	Field mustard	nucleus	23.89	23.12
PGSC0003DMT400000210	Potato	nucleus	18.33	23.08
PGSC0003DMT400085261	Potato	nucleus	20.56	22.56
GSMUA_Achr4P28260_001	Banana	nucleus	30.56	22.36
PGSC0003DMT400016092	Potato	mitochondrion	24.44	22.34
PGSC0003DMT400097135	Potato	mitochondrion	23.33	22.22
PGSC0003DMT400063794	Potato	plastid	27.78	21.64
AT1G28450.1	Thale cress	nucleus	22.22	21.62
PGSC0003DMT400013105	Potato	nucleus	24.44	20.66
GSMUA_Achr5P01940_001	Banana	nucleus	27.78	20.49
PGSC0003DMT400002920	Potato	nucleus	20.0	20.45
PGSC0003DMT400095852	Potato	cytosol	16.67	20.41
PGSC0003DMT400094024	Potato	golgi, mitochondrion	20.56	20.22
PGSC0003DMT400086619	Potato	nucleus	20.56	19.89
PGSC0003DMT400092385	Potato	mitochondrion	21.11	19.29
AT1G54760.1	Thale cress	nucleus	16.67	18.63
PGSC0003DMT400092448	Potato	plastid	22.78	18.22
PGSC0003DMT400094407	Potato	mitochondrion	20.0	17.06
GSMUA_Achr5P01990_001	Banana	nucleus	25.56	13.26
PGSC0003DMT400092220	Potato	cytosol	6.67	9.38
PGSC0003DMT400086182	Potato	cytosol	6.11	8.59
PGSC0003DMT400090145	Potato	nucleus	5.56	6.62

Protein Annotations

EntrezGene:107061204	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M1DRA5
PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400042688	PGSC:PGSC0003DMG400042688	EnsemblPlants:PGSC0003DMT400093117	PRINTS:PR00404	PFscan:PS50066
PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002954F99	RefSeq:XP_015165528.1	:	:	:	:

Description

Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400042688]

Coordinates

chr4:-:49390684..49391226

Molecular Weight (calculated)

20287.2 Da

IEP (calculated)

6.949

GRAVY (calculated)

-0.501

Length

180 amino acids

Sequence
(BLAST)

001: MEGKKTKGRQ KIPMRKIENR VALLTTFSKR REGLYKKASE LVTECDADIG IMMISPAGKP HSFFHPTADA IVSRFQNPDM LLSQGIRLDT ITARNKANQL
101: KNRLEELDAV EDAAIAQINF YDQMAEVGQK GWWESIEQLN ADEVIIFEAW LSDTCSKMRH HLNQSENGAS SSLGRESFGV

Best Arabidopsis Sequence Match ( AT3G66656.1 )
(BLAST)

001: MGRRKIKMEK VQDTNTKQVT FSKRRLGLFK KASELATLCN AEVGIVVFSP GNKPYSFGKP NFDVIAERFK NEFEEEEEGD SCETSGYSRG NRARQEKKIC
101: KRLNSITEEA EAEKKHGEDL HKWLESAEQD KFNKPIEELT LEELKEFEAK IKKISCGIQS NISHMQASSS LMFLSNDN

Arabidopsis Description

AGL91AGAMOUS-like 91 [Source:UniProtKB/TrEMBL;Acc:Q9C836]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.