Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G28460.1 | Thale cress | nucleus | 88.65 | 90.11 |
| AT1G29962.1 | Thale cress | nucleus | 82.16 | 82.16 |
| AT1G54760.1 | Thale cress | nucleus | 61.08 | 70.19 |
| CDX99867 | Canola | nucleus | 51.35 | 48.97 |
| Bra032347.1-P | Field mustard | nucleus | 44.86 | 44.62 |
| CDY26304 | Canola | nucleus | 44.32 | 44.32 |
| PGSC0003DMT400092871 | Potato | nucleus | 21.62 | 28.57 |
| PGSC0003DMT400095980 | Potato | nucleus | 25.41 | 27.17 |
| Solyc10g018070.1.1 | Tomato | nucleus | 17.3 | 26.89 |
| Solyc10g018080.1.1 | Tomato | cytosol | 21.62 | 26.49 |
| PGSC0003DMT400091428 | Potato | nucleus | 23.78 | 25.58 |
| Solyc04g056740.1.1 | Tomato | nucleus | 24.86 | 25.56 |
| PGSC0003DMT400088968 | Potato | nucleus | 15.14 | 25.45 |
| Solyc10g018110.1.1 | Tomato | nucleus | 24.86 | 25.0 |
| Solyc01g097850.1.1 | Tomato | nucleus | 23.24 | 25.0 |
| Solyc03g033890.1.1 | Tomato | nucleus | 18.92 | 25.0 |
| Solyc10g050900.1.1 | Tomato | nucleus | 22.7 | 24.85 |
| Solyc10g050950.1.1 | Tomato | nucleus | 21.08 | 24.22 |
| PGSC0003DMT400090103 | Potato | nucleus | 23.24 | 24.16 |
| PGSC0003DMT400091277 | Potato | nucleus | 23.24 | 23.89 |
| Solyc06g059780.1.1 | Tomato | nucleus | 22.7 | 23.33 |
| PGSC0003DMT400094886 | Potato | nucleus | 22.7 | 23.33 |
| PGSC0003DMT400095957 | Potato | cytosol | 16.22 | 23.26 |
| PGSC0003DMT400087813 | Potato | nucleus | 22.7 | 23.08 |
| PGSC0003DMT400093319 | Potato | nucleus | 22.16 | 23.03 |
| Solyc06g054680.1.1 | Tomato | nucleus | 22.16 | 22.78 |
| Solyc10g050940.1.1 | Tomato | nucleus | 20.54 | 22.49 |
| AT3G66656.1 | Thale cress | nucleus | 21.62 | 22.47 |
| PGSC0003DMT400093647 | Potato | nucleus | 17.3 | 22.22 |
| PGSC0003DMT400093117 | Potato | nucleus | 21.62 | 22.22 |
| Solyc03g033570.1.1 | Tomato | nucleus | 21.62 | 21.98 |
| Solyc03g033880.1.1 | Tomato | cytosol | 21.62 | 21.74 |
| PGSC0003DMT400095190 | Potato | nucleus | 21.08 | 21.67 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 28.65 | 21.54 |
| Solyc04g056550.1.1 | Tomato | nucleus | 21.08 | 21.43 |
| Solyc03g033900.1.1 | Tomato | nucleus | 21.08 | 21.31 |
| Solyc03g034260.1.1 | Tomato | nucleus | 21.08 | 21.2 |
| PGSC0003DMT400089966 | Potato | cytosol | 19.46 | 21.18 |
| Solyc03g033940.1.1 | Tomato | nucleus | 21.08 | 20.74 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 27.03 | 20.49 |
| PGSC0003DMT400090655 | Potato | cytosol | 17.84 | 18.97 |
| AT2G34440.1 | Thale cress | nucleus | 17.3 | 18.6 |
| AT1G72350.1 | Thale cress | nucleus | 22.16 | 18.3 |
| PGSC0003DMT400097360 | Potato | cytosol | 12.97 | 18.18 |
| PGSC0003DMT400095917 | Potato | cytosol | 12.97 | 18.18 |
| PGSC0003DMT400088611 | Potato | nucleus | 16.22 | 18.18 |
| AT1G17310.2 | Thale cress | nucleus | 22.16 | 17.98 |
| PGSC0003DMT400094043 | Potato | cytosol | 14.05 | 17.45 |
| AT2G24840.1 | Thale cress | nucleus | 24.86 | 17.42 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 19.46 | 16.74 |
| AT4G36590.1 | Thale cress | nucleus | 22.16 | 16.53 |
| AT1G65360.1 | Thale cress | nucleus | 20.0 | 16.37 |
| PGSC0003DMT400089582 | Potato | cytosol | 14.05 | 16.15 |
| PGSC0003DMT400097679 | Potato | cytosol | 10.81 | 15.62 |
| PGSC0003DMT400088010 | Potato | cytosol | 13.51 | 15.53 |
| AT1G01530.1 | Thale cress | nucleus | 20.0 | 14.98 |
| AT5G60440.1 | Thale cress | nucleus | 23.24 | 14.38 |
| Solyc03g033930.1.1 | Tomato | cytosol | 7.57 | 14.0 |
| PGSC0003DMT400027289 | Potato | cytosol | 9.73 | 13.95 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 23.78 | 12.68 |
| Solyc06g065960.1.1 | Tomato | nucleus | 5.95 | 12.09 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 5.41 | 9.71 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:839743 | ProteinID:AAF16765.1 | ProteinID:AEE30978.1 | Symbol:AGL58 |
| ArrayExpress:AT1G28450 | EnsemblPlantsGene:AT1G28450 | RefSeq:AT1G28450 | TAIR:AT1G28450 | RefSeq:AT1G28450-TAIR-G | EnsemblPlants:AT1G28450.1 |
| TAIR:AT1G28450.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_174167.1 | PFAM:PF00319 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0009009 | PO:PO:0009089 | PO:PO:0020093 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | UniProt:Q9SGP3 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | TMHMM:TMhelix | UniParc:UPI00000A79F4 | SEG:seg | : | : |
Description
AGL58F3M18.11 [Source:UniProtKB/TrEMBL;Acc:Q9SGP3]
Coordinates
chr1:+:10003880..10004581
Molecular Weight (calculated)
21146.5 Da
IEP (calculated)
10.230
GRAVY (calculated)
-0.805
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPKKTKGKQ KINIKKIEKD EDRSVTLSKR LNAIYTMIIE LSILCGVEVA FIGYSCSGKP YTFGSPSFQA VVERFLNGEA SSSSSSSLQR SVKNAHKQAK
101: IQELCKRYNR LVEELKVDEV KVKKAAALAE TRAVNKDAWW KADPNDVKDH EKAKKMMEKY QELKEKLREE VALRIKRGHD ENNNK
101: IQELCKRYNR LVEELKVDEV KVKKAAALAE TRAVNKDAWW KADPNDVKDH EKAKKMMEKY QELKEKLREE VALRIKRGHD ENNNK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.