Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g018110.1.1 | Tomato | nucleus | 88.08 | 72.28 |
| Solyc10g018070.1.1 | Tomato | nucleus | 55.63 | 70.59 |
| PGSC0003DMT400097360 | Potato | cytosol | 52.32 | 59.85 |
| PGSC0003DMT400095917 | Potato | cytosol | 51.66 | 59.09 |
| Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 39.74 | 51.28 |
| Solyc10g050950.1.1 | Tomato | nucleus | 49.67 | 46.58 |
| Solyc10g050900.1.1 | Tomato | nucleus | 49.67 | 44.38 |
| Solyc03g033890.1.1 | Tomato | nucleus | 41.06 | 44.29 |
| Solyc10g050940.1.1 | Tomato | nucleus | 49.01 | 43.79 |
| Solyc03g033570.1.1 | Tomato | nucleus | 52.32 | 43.41 |
| Solyc04g056740.1.1 | Tomato | nucleus | 50.99 | 42.78 |
| Solyc04g056550.1.1 | Tomato | nucleus | 48.34 | 40.11 |
| Solyc01g097850.1.1 | Tomato | nucleus | 45.03 | 39.53 |
| Solyc03g033900.1.1 | Tomato | nucleus | 47.68 | 39.34 |
| Solyc03g033880.1.1 | Tomato | cytosol | 47.02 | 38.59 |
| Solyc06g059780.1.1 | Tomato | nucleus | 45.7 | 38.33 |
| Solyc06g054680.1.1 | Tomato | nucleus | 44.37 | 37.22 |
| Solyc03g033940.1.1 | Tomato | nucleus | 45.7 | 36.7 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 13.24 | 35.71 |
| Solyc03g034260.1.1 | Tomato | nucleus | 41.72 | 34.24 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 41.72 | 29.3 |
| Solyc03g033930.1.1 | Tomato | cytosol | 18.54 | 28.0 |
| Solyc06g065960.1.1 | Tomato | nucleus | 16.56 | 27.47 |
| AT1G29962.1 | Thale cress | nucleus | 28.48 | 23.24 |
| Solyc01g106710.1.1 | Tomato | nucleus | 33.11 | 22.62 |
| AT1G28460.1 | Thale cress | nucleus | 27.15 | 22.53 |
| Solyc04g025110.1.1 | Tomato | mitochondrion, nucleus, plastid | 19.21 | 22.31 |
| Solyc01g106720.1.1 | Tomato | nucleus | 31.13 | 22.27 |
| AT1G28450.1 | Thale cress | nucleus | 26.49 | 21.62 |
| Solyc04g047870.1.1 | Tomato | mitochondrion, nucleus | 27.15 | 21.58 |
| CDX99867 | Canola | nucleus | 27.15 | 21.13 |
| Solyc11g069770.1.1 | Tomato | nucleus | 25.17 | 20.99 |
| CDY26304 | Canola | nucleus | 24.5 | 20.0 |
| Solyc01g106730.1.1 | Tomato | mitochondrion | 29.14 | 19.91 |
| Solyc01g060310.1.1 | Tomato | nucleus, plastid | 17.88 | 19.42 |
| Bra032347.1-P | Field mustard | nucleus | 23.84 | 19.35 |
| AT1G54760.1 | Thale cress | nucleus | 19.87 | 18.63 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 29.14 | 17.89 |
| Solyc04g025030.1.1 | Tomato | mitochondrion | 15.23 | 17.04 |
| Solyc04g064860.1.1 | Tomato | plastid | 25.17 | 16.31 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 25.17 | 15.57 |
| Solyc01g106700.2.1 | Tomato | nucleus | 21.85 | 15.49 |
| Solyc01g060300.1.1 | Tomato | nucleus | 18.54 | 13.27 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 25.17 | 10.95 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K4CYT2 | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 |
| EnsemblPlantsGene:Solyc10g018080.1 | EnsemblPlants:Solyc10g018080.1.1 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000276C584 | : |
Description
No Description!
Coordinates
chr10:+:6690949..6691404
Molecular Weight (calculated)
17219.5 Da
IEP (calculated)
7.044
GRAVY (calculated)
-0.522
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHKKTAGCQ KTSLAKIENE SARLTTFSKR RSGLYKIACE LVRECDVDLG IVMSSPKGIP YSFSSQTSNV VINHFINPTA KLSSSDHLVA SEARKRVSQF
101: NDILNELDER EKIANEKLDQ MNEARDLGWW ESIDRLNVHD VMKLEAWLNL H
101: NDILNELDER EKIANEKLDQ MNEARDLGWW ESIDRLNVHD VMKLEAWLNL H
001: MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP NLDSVAERFM REYDDSDSGD EEKSGNYRPK LKRLSERLDL
101: LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH GRIEGQVNHL QASSCLMLLS RK
101: LNQEVEAEKE RGEKSQEKLE SAGDERFKES IETLTLDELN EYKDRLQTVH GRIEGQVNHL QASSCLMLLS RK
Arabidopsis Description
AGL29AGL29 [Source:UniProtKB/TrEMBL;Acc:A0A178VU29]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.