Factsheet for Solyc01g060300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g060310.1.1	Tomato	nucleus, plastid	50.24	76.26
PGSC0003DMT400088636	Potato	mitochondrion	31.75	57.27
Solyc04g025050.1.1	Tomato	golgi, mitochondrion, nucleus, plastid	14.22	53.57
PGSC0003DMT400016092	Potato	mitochondrion	45.5	48.73
PGSC0003DMT400092385	Potato	mitochondrion	39.81	42.64
PGSC0003DMT400090264	Potato	mitochondrion	30.33	42.11
PGSC0003DMT400097162	Potato	nucleus	32.23	41.21
PGSC0003DMT400097714	Potato	mitochondrion	27.49	38.67
PGSC0003DMT400097135	Potato	mitochondrion	34.12	38.1
PGSC0003DMT400094407	Potato	mitochondrion	35.07	35.07
PGSC0003DMT400094024	Potato	golgi, mitochondrion	29.86	34.43
PGSC0003DMT400086619	Potato	nucleus	27.96	31.72
Solyc04g047870.1.1	Tomato	mitochondrion, nucleus	26.07	28.95
KRH41505	Soybean	cytosol, nucleus, plastid	21.8	28.57
Solyc04g025110.1.1	Tomato	mitochondrion, nucleus, plastid	17.54	28.46
Solyc04g025030.1.1	Tomato	mitochondrion	18.01	28.15
KRH60217	Soybean	nucleus	23.22	27.68
Solyc01g106730.1.1	Tomato	mitochondrion	28.44	27.15
Solyc11g069770.1.1	Tomato	nucleus	22.27	25.97
KRH60216	Soybean	nucleus	22.75	25.95
AT3G66656.1	Thale cress	nucleus	21.8	25.84
Solyc01g106720.1.1	Tomato	nucleus	25.59	25.59
KRG99424	Soybean	nucleus	21.33	24.73
Solyc01g106710.1.1	Tomato	nucleus	25.59	24.43
KRH41503	Soybean	nucleus	18.48	24.38
Solyc10g018070.1.1	Tomato	nucleus	13.74	24.37
Solyc04g056550.1.1	Tomato	nucleus	20.38	23.63
CDY57614	Canola	nucleus	19.91	23.46
CDX74094	Canola	nucleus	19.91	23.46
Bra001209.1-P	Field mustard	nucleus	19.91	23.46
KRH45604	Soybean	nucleus	20.85	23.28
AT2G34440.1	Thale cress	nucleus	18.96	23.26
VIT_00s0386g00010.t01	Wine grape	nucleus	22.27	23.15
Solyc03g033890.1.1	Tomato	nucleus	15.17	22.86
Bra021910.1-P	Field mustard	nucleus	19.43	22.53
Solyc04g056740.1.1	Tomato	nucleus	18.48	21.67
Solyc10g050900.1.1	Tomato	nucleus	16.11	20.12
Solyc03g033880.1.1	Tomato	cytosol	17.06	19.57
Solyc01g097850.1.1	Tomato	nucleus	15.64	19.19
Solyc03g033900.1.1	Tomato	nucleus	16.59	19.13
Solyc10g018110.1.1	Tomato	nucleus	16.59	19.02
Solyc04g025970.1.1	Tomato	cytosol, nucleus, peroxisome	10.43	18.8
Solyc03g033570.1.1	Tomato	nucleus	16.11	18.68
Solyc03g033940.1.1	Tomato	nucleus	16.59	18.62
PGSC0003DMT400090145	Potato	nucleus	13.27	18.54
Solyc10g018080.1.1	Tomato	cytosol	13.27	18.54
GSMUA_Achr5P01940_001	Banana	nucleus	21.33	18.44
Solyc10g050940.1.1	Tomato	nucleus	14.69	18.34
Solyc03g007020.1.1	Tomato	mitochondrion, nucleus, plastid	18.48	18.14
Solyc10g050950.1.1	Tomato	nucleus	13.74	18.01
Solyc01g106700.2.1	Tomato	nucleus	18.01	17.84
Solyc06g059780.1.1	Tomato	nucleus	15.17	17.78
Solyc03g034260.1.1	Tomato	nucleus	15.17	17.39
Solyc06g054680.1.1	Tomato	nucleus	14.69	17.22
Solyc04g064860.1.1	Tomato	plastid	18.48	16.74
GSMUA_Achr4P28260_001	Banana	nucleus	18.48	15.85
PGSC0003DMT400086182	Potato	cytosol	9.0	14.84
PGSC0003DMT400092220	Potato	cytosol	8.53	14.06
GSMUA_Achr5P01990_001	Banana	nucleus	18.01	10.95
Solyc03g033930.1.1	Tomato	cytosol	3.79	8.0
Solyc06g065960.1.1	Tomato	nucleus	1.9	4.4

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:K4AWD3
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185
SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc01g060300.1	EnsemblPlants:Solyc01g060300.1.1	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI000276251D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:69977901..69981558

Molecular Weight (calculated)

23123.9 Da

IEP (calculated)

9.358

GRAVY (calculated)

-0.217

Length

211 amino acids

Sequence
(BLAST)

001: MRKPNGRKKI EIAKIQNQTN LQVTLSKRRA GLFKKASELS TLCGANVAIV AFSPSNKVYA CGHPSVESIV DKFIGENPPP ETDDPNPIIV MTADTIPKGS
101: PFTSMQEFSL GIDFGKLCQI TCVPQLIESC PNSSILQIWT DYHLGSTNEL AHQALLDLGG YRLVILPLHR AGTVRCSVKP ASRSPFHFRN PSAHSFDWIA
201: RPNSMLGQGR P

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.