Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g054680.1.1 | Tomato | nucleus | 94.44 | 94.44 |
| PGSC0003DMT400091277 | Potato | nucleus | 92.22 | 92.22 |
| Solyc06g065960.1.1 | Tomato | nucleus | 43.33 | 85.71 |
| Solyc04g056740.1.1 | Tomato | nucleus | 65.56 | 65.56 |
| Solyc10g050900.1.1 | Tomato | nucleus | 58.33 | 62.13 |
| Solyc04g056550.1.1 | Tomato | nucleus | 62.78 | 62.09 |
| Solyc10g050940.1.1 | Tomato | nucleus | 55.0 | 58.58 |
| Solyc10g050950.1.1 | Tomato | nucleus | 52.22 | 58.39 |
| Solyc01g097850.1.1 | Tomato | nucleus | 51.11 | 53.49 |
| Solyc10g018070.1.1 | Tomato | nucleus | 31.11 | 47.06 |
| Solyc10g018080.1.1 | Tomato | cytosol | 38.33 | 45.7 |
| Solyc10g018110.1.1 | Tomato | nucleus | 46.67 | 45.65 |
| Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 28.89 | 44.44 |
| Solyc03g034260.1.1 | Tomato | nucleus | 45.0 | 44.02 |
| Solyc03g033890.1.1 | Tomato | nucleus | 32.22 | 41.43 |
| Solyc03g033570.1.1 | Tomato | nucleus | 41.67 | 41.21 |
| Solyc03g033900.1.1 | Tomato | nucleus | 40.56 | 39.89 |
| Solyc03g033880.1.1 | Tomato | cytosol | 40.0 | 39.13 |
| Solyc03g033940.1.1 | Tomato | nucleus | 40.56 | 38.83 |
| Solyc03g033930.1.1 | Tomato | cytosol | 21.11 | 38.0 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 42.78 | 35.81 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 11.11 | 35.71 |
| Solyc04g025030.1.1 | Tomato | mitochondrion | 19.44 | 25.93 |
| Solyc01g106710.1.1 | Tomato | nucleus | 31.11 | 25.34 |
| AT1G28460.1 | Thale cress | nucleus | 25.56 | 25.27 |
| Solyc04g025110.1.1 | Tomato | mitochondrion, nucleus, plastid | 17.22 | 23.85 |
| AT1G29962.1 | Thale cress | nucleus | 24.44 | 23.78 |
| Solyc01g106720.1.1 | Tomato | nucleus | 27.78 | 23.7 |
| CDX99867 | Canola | nucleus | 25.0 | 23.2 |
| Solyc04g047870.1.1 | Tomato | mitochondrion, nucleus | 24.44 | 23.16 |
| AT1G28450.1 | Thale cress | nucleus | 23.33 | 22.7 |
| CDY26304 | Canola | nucleus | 23.33 | 22.7 |
| Solyc01g106730.1.1 | Tomato | mitochondrion | 27.78 | 22.62 |
| Bra032347.1-P | Field mustard | nucleus | 22.22 | 21.51 |
| Solyc04g064860.1.1 | Tomato | plastid | 27.22 | 21.03 |
| Solyc11g069770.1.1 | Tomato | nucleus | 21.11 | 20.99 |
| Solyc01g060310.1.1 | Tomato | nucleus, plastid | 16.11 | 20.86 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 28.33 | 20.73 |
| Solyc01g106700.2.1 | Tomato | nucleus | 24.44 | 20.66 |
| AT1G54760.1 | Thale cress | nucleus | 16.11 | 18.01 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 23.89 | 17.62 |
| Solyc01g060300.1.1 | Tomato | nucleus | 17.78 | 15.17 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 25.0 | 12.97 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K4C6G5 | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 |
| EnsemblPlantsGene:Solyc06g059780.1 | EnsemblPlants:Solyc06g059780.1.1 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002765D80 | : |
Description
No Description!
Coordinates
chr6:+:37677293..37677835
Molecular Weight (calculated)
21058.8 Da
IEP (calculated)
6.372
GRAVY (calculated)
-0.888
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKKTKGRQ KIPMKKIENK DSMFASFTKR REGLYRKASE LATEYNVDIG IMMISSTGKP HSFFHPTFDA VISRFQNPDM QFGESTNLEA NAARNEVNQL
101: KTKLEELDVR EDIAIAKKNS YEQMEETRQK DWWESTEQLN ADQVFIFETW LNETSSNLHH RLNQLEIEAS SSMRHESFGV
101: KTKLEELDVR EDIAIAKKNS YEQMEETRQK DWWESTEQLN ADQVFIFETW LNETSSNLHH RLNQLEIEAS SSMRHESFGV
001: MNPKKTKGKQ KINIKKIEKD EGRSVTFSKR LNGIYTKISE LSILCGVEVA FIGYSCSGKP YTFGSPSFQA VAERFLNGDA SSSSSSSLVM NAHKQAKIQE
101: LCKKYNRLVE ELKVDEVKVK KAAALAETRV VNKDVWWKVD PNDVKDHEKA KKMMEKYQEL YDKLCEQAAS RIKRGHDENN NK
101: LCKKYNRLVE ELKVDEVKVK KAAALAETRV VNKDVWWKVD PNDVKDHEKA KKMMEKYQEL YDKLCEQAAS RIKRGHDENN NK
Arabidopsis Description
AGL59F3M18.10 [Source:UniProtKB/TrEMBL;Acc:Q9SGP4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.