Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g050940.1.1 | Tomato | nucleus | 90.53 | 90.53 |
| Solyc10g050950.1.1 | Tomato | nucleus | 82.84 | 86.96 |
| PGSC0003DMT400093319 | Potato | nucleus | 86.39 | 82.02 |
| PGSC0003DMT400090103 | Potato | nucleus | 82.25 | 78.09 |
| Solyc04g056740.1.1 | Tomato | nucleus | 62.72 | 58.89 |
| Solyc06g059780.1.1 | Tomato | nucleus | 62.13 | 58.33 |
| Solyc06g054680.1.1 | Tomato | nucleus | 62.13 | 58.33 |
| Solyc04g056550.1.1 | Tomato | nucleus | 59.76 | 55.49 |
| Solyc01g097850.1.1 | Tomato | nucleus | 53.25 | 52.33 |
| Solyc06g065960.1.1 | Tomato | nucleus | 27.22 | 50.55 |
| Solyc10g018080.1.1 | Tomato | cytosol | 44.38 | 49.67 |
| Solyc10g018110.1.1 | Tomato | nucleus | 48.52 | 44.57 |
| Solyc03g033890.1.1 | Tomato | nucleus | 36.09 | 43.57 |
| Solyc03g034260.1.1 | Tomato | nucleus | 46.75 | 42.93 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 14.2 | 42.86 |
| Solyc10g018070.1.1 | Tomato | nucleus | 30.18 | 42.86 |
| Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 28.4 | 41.03 |
| Solyc03g033570.1.1 | Tomato | nucleus | 40.83 | 37.91 |
| Solyc03g033900.1.1 | Tomato | nucleus | 40.83 | 37.7 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 47.93 | 37.67 |
| Solyc03g033880.1.1 | Tomato | cytosol | 40.24 | 36.96 |
| Solyc03g033940.1.1 | Tomato | nucleus | 40.24 | 36.17 |
| Solyc03g033930.1.1 | Tomato | cytosol | 18.34 | 31.0 |
| Solyc01g106710.1.1 | Tomato | nucleus | 37.87 | 28.96 |
| Solyc04g025030.1.1 | Tomato | mitochondrion | 21.3 | 26.67 |
| Solyc01g106720.1.1 | Tomato | nucleus | 31.95 | 25.59 |
| AT1G28460.1 | Thale cress | nucleus | 26.04 | 24.18 |
| Solyc01g106730.1.1 | Tomato | mitochondrion | 31.36 | 23.98 |
| Solyc04g025110.1.1 | Tomato | mitochondrion, nucleus, plastid | 18.34 | 23.85 |
| AT1G29962.1 | Thale cress | nucleus | 26.04 | 23.78 |
| Solyc04g047870.1.1 | Tomato | mitochondrion, nucleus | 26.04 | 23.16 |
| Solyc01g060310.1.1 | Tomato | nucleus, plastid | 18.93 | 23.02 |
| AT1G28450.1 | Thale cress | nucleus | 24.85 | 22.7 |
| Solyc11g069770.1.1 | Tomato | nucleus | 23.67 | 22.1 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 31.95 | 21.95 |
| CDX99867 | Canola | nucleus | 24.85 | 21.65 |
| CDY26304 | Canola | nucleus | 23.08 | 21.08 |
| Bra032347.1-P | Field mustard | nucleus | 22.49 | 20.43 |
| Solyc04g064860.1.1 | Tomato | plastid | 27.22 | 19.74 |
| Solyc01g106700.2.1 | Tomato | nucleus | 24.26 | 19.25 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 25.44 | 17.62 |
| AT1G54760.1 | Thale cress | nucleus | 16.57 | 17.39 |
| Solyc01g060300.1.1 | Tomato | nucleus | 20.12 | 16.11 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 27.22 | 13.26 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K4D0P4 | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 |
| EnsemblPlantsGene:Solyc10g050900.1 | EnsemblPlants:Solyc10g050900.1.1 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000276A559 | : |
Description
No Description!
Coordinates
chr10:+:51174364..51174873
Molecular Weight (calculated)
19797.6 Da
IEP (calculated)
7.834
GRAVY (calculated)
-0.705
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MENKKTKGRQ KIPMKKIENE KALLSSFSKR RNGLFKAANN LVKKFDVDIG IIVFSPTGKP HSYFHPTVDA VISRFQNPDM QLSDETHLAM IFARNSVNQL
101: EKKLEELDIQ EKIEIDRTNY LDQMTETRQK GWWESIEQLN EDEVSKFEEW LNVASFTMHY RLNQSIVSS
101: EKKLEELDIQ EKIEIDRTNY LDQMTETRQK GWWESIEQLN EDEVSKFEEW LNVASFTMHY RLNQSIVSS
001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA
Arabidopsis Description
AGL57AGAMOUS-like 57 [Source:UniProtKB/TrEMBL;Acc:Q9M8W6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.