Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013136 | Potato | nucleus | 91.47 | 97.97 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 34.12 | 69.9 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 17.54 | 66.07 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 56.4 | 55.87 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 54.5 | 51.34 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 51.66 | 50.93 |
| Solyc01g106710.1.1 | Tomato | nucleus | 51.66 | 49.32 |
| Solyc04g047870.1.1 | Tomato | mitochondrion, nucleus | 37.44 | 41.58 |
| Solyc04g025110.1.1 | Tomato | mitochondrion, nucleus, plastid | 24.64 | 40.0 |
| Solyc01g106730.1.1 | Tomato | mitochondrion | 41.71 | 39.82 |
| Solyc04g025030.1.1 | Tomato | mitochondrion | 23.7 | 37.04 |
| Solyc01g060310.1.1 | Tomato | nucleus, plastid | 22.27 | 33.81 |
| Solyc10g018070.1.1 | Tomato | nucleus | 18.48 | 32.77 |
| Solyc10g050950.1.1 | Tomato | nucleus | 24.64 | 32.3 |
| Solyc10g050900.1.1 | Tomato | nucleus | 25.59 | 31.95 |
| Solyc04g056550.1.1 | Tomato | nucleus | 27.49 | 31.87 |
| Solyc04g056740.1.1 | Tomato | nucleus | 27.01 | 31.67 |
| Solyc03g033890.1.1 | Tomato | nucleus | 20.85 | 31.43 |
| Solyc10g050940.1.1 | Tomato | nucleus | 25.12 | 31.36 |
| Solyc10g018080.1.1 | Tomato | cytosol | 22.27 | 31.13 |
| Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 17.06 | 30.77 |
| Solyc11g069770.1.1 | Tomato | nucleus | 26.07 | 30.39 |
| Solyc01g097850.1.1 | Tomato | nucleus | 24.64 | 30.23 |
| Solyc10g018110.1.1 | Tomato | nucleus | 25.12 | 28.8 |
| Solyc04g064860.1.1 | Tomato | plastid | 30.81 | 27.9 |
| Solyc06g054680.1.1 | Tomato | nucleus | 23.7 | 27.78 |
| Solyc06g059780.1.1 | Tomato | nucleus | 23.7 | 27.78 |
| Solyc03g033570.1.1 | Tomato | nucleus | 23.22 | 26.92 |
| Solyc01g106700.2.1 | Tomato | nucleus | 27.01 | 26.76 |
| Solyc03g033880.1.1 | Tomato | cytosol | 23.22 | 26.63 |
| Solyc03g033900.1.1 | Tomato | nucleus | 22.27 | 25.68 |
| Solyc01g060300.1.1 | Tomato | nucleus | 25.59 | 25.59 |
| Solyc03g033940.1.1 | Tomato | nucleus | 22.75 | 25.53 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 28.91 | 25.0 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 28.44 | 24.39 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 24.64 | 24.19 |
| Solyc03g034260.1.1 | Tomato | nucleus | 20.85 | 23.91 |
| Solyc03g033930.1.1 | Tomato | cytosol | 9.95 | 21.0 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 30.81 | 18.73 |
| Solyc06g065960.1.1 | Tomato | nucleus | 7.11 | 16.48 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:K4B2N9 | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 |
| EnsemblPlantsGene:Solyc01g106720.1 | EnsemblPlants:Solyc01g106720.1.1 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00027678D7 | SEG:seg |
Description
No Description!
Coordinates
chr1:-:94472664..94473299
Molecular Weight (calculated)
23532.5 Da
IEP (calculated)
10.348
GRAVY (calculated)
-0.477
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKMSKGRQ KIQMTKMSKE SNLLVTFSKR RSGLFKKASE LCTLCGVEIA IVVFSPGHKV FSFGHPNVDS IVNRFLTRNP TSSSSTTCQL VEAHRNANVR
101: ELNAQLTEIL NQLEFEKKRE VEIEKIQKGK IGKNWWEGPL NELEHGELEQ LKLGMEELKK NVTKQMQKII FEASNAPTFF LGGSSSSNGD VKNMKGLGLS
201: MATNGGHTSF P
101: ELNAQLTEIL NQLEFEKKRE VEIEKIQKGK IGKNWWEGPL NELEHGELEQ LKLGMEELKK NVTKQMQKII FEASNAPTFF LGGSSSSNGD VKNMKGLGLS
201: MATNGGHTSF P
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.