Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | plasma membrane | 4.1 | 90.91 |
| CDY36151 | Canola | nucleus | 16.39 | 45.45 |
| KRH22644 | Soybean | nucleus | 24.18 | 42.45 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 9.43 | 41.07 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 16.39 | 38.84 |
| GSMUA_Achr5P26530_001 | Banana | mitochondrion, nucleus, plastid | 33.61 | 36.44 |
| Solyc10g018070.1.1 | Tomato | nucleus | 17.21 | 35.29 |
| KRH41505 | Soybean | cytosol, nucleus, plastid | 22.54 | 34.16 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 34.02 | 33.74 |
| GSMUA_Achr8P07230_001 | Banana | nucleus | 31.97 | 33.05 |
| GSMUA_Achr4P11900_001 | Banana | nucleus | 19.67 | 32.88 |
| KRH60217 | Soybean | nucleus | 23.77 | 32.77 |
| KRH32912 | Soybean | nucleus | 22.95 | 32.37 |
| KRH32946 | Soybean | nucleus | 22.95 | 32.37 |
| CDY71457 | Canola | nucleus | 16.39 | 32.26 |
| AT2G34440.1 | Thale cress | nucleus | 22.54 | 31.98 |
| KRH33030 | Soybean | nucleus | 14.75 | 31.86 |
| KRH32900 | Soybean | nucleus | 22.54 | 31.79 |
| KRH32901 | Soybean | nucleus | 22.54 | 31.79 |
| KRH32904 | Soybean | nucleus | 22.54 | 31.79 |
| KRH32909 | Soybean | nucleus | 22.54 | 31.79 |
| PGSC0003DMT400088636 | Potato | mitochondrion | 15.16 | 31.62 |
| KRH32910 | Soybean | nucleus | 22.95 | 31.46 |
| CDY69485 | Canola | nucleus | 15.98 | 31.45 |
| PGSC0003DMT400086435 | Potato | nucleus | 13.52 | 31.43 |
| VIT_03s0088g00590.t01 | Wine grape | nucleus | 27.46 | 31.31 |
| KRH32915 | Soybean | nucleus | 22.13 | 31.21 |
| Solyc01g060310.1.1 | Tomato | nucleus, plastid | 17.62 | 30.94 |
| PGSC0003DMT400090264 | Potato | mitochondrion | 19.26 | 30.92 |
| KRH32917 | Soybean | nucleus | 22.54 | 30.9 |
| PGSC0003DMT400086589 | Potato | mitochondrion | 20.9 | 30.72 |
| PGSC0003DMT400091054 | Potato | plastid | 14.34 | 30.7 |
| KRG88448 | Soybean | nucleus | 21.72 | 30.64 |
| KRH32916 | Soybean | nucleus | 21.72 | 30.64 |
| Bra032057.1-P | Field mustard | nucleus | 22.54 | 30.56 |
| PGSC0003DMT400095668 | Potato | mitochondrion | 15.16 | 30.33 |
| PGSC0003DMT400097162 | Potato | nucleus | 20.49 | 30.3 |
| KRH60216 | Soybean | nucleus | 22.95 | 30.27 |
| CDX81713 | Canola | nucleus | 20.08 | 30.25 |
| KRG99424 | Soybean | nucleus | 22.54 | 30.22 |
| Solyc03g033890.1.1 | Tomato | nucleus | 17.21 | 30.0 |
| PGSC0003DMT400090556 | Potato | mitochondrion, nucleus, plastid | 20.49 | 29.94 |
| AT3G66656.1 | Thale cress | nucleus | 21.72 | 29.78 |
| PGSC0003DMT400094942 | Potato | nucleus | 15.98 | 29.77 |
| Bra026764.1-P | Field mustard | nucleus | 20.49 | 29.76 |
| CDY55987 | Canola | nucleus | 20.49 | 29.76 |
| PGSC0003DMT400085650 | Potato | mitochondrion | 20.49 | 29.76 |
| AT1G28460.1 | Thale cress | nucleus | 22.13 | 29.67 |
| CDX99867 | Canola | nucleus | 23.36 | 29.38 |
| VIT_01s0010g01530.t01 | Wine grape | nucleus | 23.36 | 29.38 |
| VIT_03s0088g00610.t01 | Wine grape | cytosol | 26.23 | 29.22 |
| CDY26304 | Canola | nucleus | 22.13 | 29.19 |
| Bra021910.1-P | Field mustard | nucleus | 21.72 | 29.12 |
| Solyc01g106720.1.1 | Tomato | nucleus | 25.0 | 28.91 |
| KRH45604 | Soybean | nucleus | 22.13 | 28.57 |
| PGSC0003DMT400091464 | Potato | mitochondrion | 20.49 | 28.41 |
| KRH71935 | Soybean | nucleus | 20.49 | 28.25 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 24.59 | 28.17 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 25.82 | 28.12 |
| AT1G29962.1 | Thale cress | nucleus | 21.31 | 28.11 |
| VIT_00s0386g00010.t01 | Wine grape | nucleus | 23.36 | 28.08 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 24.59 | 28.04 |
| KRG91147 | Soybean | nucleus | 27.46 | 28.03 |
| KRH28025 | Soybean | nucleus | 19.26 | 27.98 |
| Bra032347.1-P | Field mustard | nucleus | 21.31 | 27.96 |
| CDY57614 | Canola | nucleus | 20.49 | 27.93 |
| PGSC0003DMT400013136 | Potato | nucleus | 22.54 | 27.92 |
| PGSC0003DMT400095957 | Potato | cytosol | 14.75 | 27.91 |
| KRG91150 | Soybean | nucleus | 25.82 | 27.88 |
| KRH35626 | Soybean | nucleus | 25.82 | 27.88 |
| KRH72149 | Soybean | mitochondrion | 19.26 | 27.81 |
| PGSC0003DMT400093117 | Potato | nucleus | 20.49 | 27.78 |
| PGSC0003DMT400094886 | Potato | nucleus | 20.49 | 27.78 |
| PGSC0003DMT400089966 | Potato | cytosol | 19.26 | 27.65 |
| PGSC0003DMT400097135 | Potato | mitochondrion | 21.31 | 27.51 |
| Bra001209.1-P | Field mustard | nucleus | 20.08 | 27.37 |
| CDX74094 | Canola | nucleus | 20.08 | 27.37 |
| Solyc04g056740.1.1 | Tomato | nucleus | 20.08 | 27.22 |
| PGSC0003DMT400094816 | Potato | golgi, nucleus, plastid | 24.59 | 27.15 |
| Solyc01g106710.1.1 | Tomato | nucleus | 24.59 | 27.15 |
| AT1G28450.1 | Thale cress | nucleus | 20.49 | 27.03 |
| AT1G65360.1 | Thale cress | nucleus | 25.0 | 26.99 |
| PGSC0003DMT400094062 | Potato | nucleus | 22.54 | 26.96 |
| Solyc04g025110.1.1 | Tomato | mitochondrion, nucleus, plastid | 14.34 | 26.92 |
| KRH41503 | Soybean | nucleus | 17.62 | 26.88 |
| KRG91148 | Soybean | nucleus | 26.64 | 26.86 |
| Solyc04g047870.1.1 | Tomato | mitochondrion, nucleus | 20.9 | 26.84 |
| PGSC0003DMT400091428 | Potato | nucleus | 18.85 | 26.74 |
| KRH32873 | Soybean | nucleus | 23.77 | 26.73 |
| PGSC0003DMT400095190 | Potato | nucleus | 19.67 | 26.67 |
| PGSC0003DMT400097714 | Potato | mitochondrion | 16.39 | 26.67 |
| PGSC0003DMT400092871 | Potato | nucleus | 15.16 | 26.43 |
| PGSC0003DMT400093319 | Potato | nucleus | 19.26 | 26.4 |
| Solyc04g056550.1.1 | Tomato | nucleus | 19.67 | 26.37 |
| PGSC0003DMT400088968 | Potato | nucleus | 11.89 | 26.36 |
| KRH72042 | Soybean | extracellular | 11.07 | 26.21 |
| Solyc01g097850.1.1 | Tomato | nucleus | 18.44 | 26.16 |
| Bra007829.1-P | Field mustard | nucleus | 22.13 | 26.09 |
| Solyc10g018110.1.1 | Tomato | nucleus | 19.67 | 26.09 |
| KRH35628 | Soybean | nucleus | 26.23 | 25.91 |
| PGSC0003DMT400087813 | Potato | nucleus | 19.26 | 25.82 |
| Solyc01g106730.1.1 | Tomato | mitochondrion | 23.36 | 25.79 |
| Solyc03g033900.1.1 | Tomato | nucleus | 19.26 | 25.68 |
| Solyc03g033940.1.1 | Tomato | nucleus | 19.67 | 25.53 |
| Solyc10g050900.1.1 | Tomato | nucleus | 17.62 | 25.44 |
| Solyc10g050940.1.1 | Tomato | nucleus | 17.62 | 25.44 |
| PGSC0003DMT400016092 | Potato | mitochondrion | 20.49 | 25.38 |
| PGSC0003DMT400090103 | Potato | nucleus | 18.44 | 25.28 |
| Solyc10g018080.1.1 | Tomato | cytosol | 15.57 | 25.17 |
| Solyc10g050950.1.1 | Tomato | nucleus | 16.39 | 24.84 |
| AT1G01530.1 | Thale cress | nucleus | 25.0 | 24.7 |
| KRH35629 | Soybean | nucleus | 21.31 | 24.64 |
| PGSC0003DMT400091277 | Potato | nucleus | 18.03 | 24.44 |
| KRG91149 | Soybean | mitochondrion | 24.18 | 24.38 |
| PGSC0003DMT400088611 | Potato | nucleus | 16.39 | 24.24 |
| PGSC0003DMT400086619 | Potato | nucleus | 18.44 | 24.19 |
| Solyc03g033570.1.1 | Tomato | nucleus | 18.03 | 24.18 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 34.02 | 23.92 |
| Solyc03g033880.1.1 | Tomato | cytosol | 18.03 | 23.91 |
| Solyc06g059780.1.1 | Tomato | nucleus | 17.62 | 23.89 |
| PGSC0003DMT400095852 | Potato | cytosol | 14.34 | 23.81 |
| CDY09199 | Canola | nucleus | 24.18 | 23.79 |
| PGSC0003DMT400085261 | Potato | nucleus | 15.98 | 23.78 |
| PGSC0003DMT400095980 | Potato | nucleus | 16.8 | 23.7 |
| PGSC0003DMT400093647 | Potato | nucleus | 13.93 | 23.61 |
| PGSC0003DMT400094407 | Potato | mitochondrion | 20.08 | 23.22 |
| CDX95426 | Canola | nucleus | 26.23 | 23.19 |
| CDY42198 | Canola | nucleus | 26.23 | 23.19 |
| KRH72146 | Soybean | nucleus | 18.03 | 23.16 |
| Solyc04g025970.1.1 | Tomato | cytosol, nucleus, peroxisome | 11.07 | 23.08 |
| Bra020242.1-P | Field mustard | nucleus | 23.36 | 22.98 |
| AT1G54760.1 | Thale cress | nucleus | 15.16 | 22.98 |
| Solyc04g025030.1.1 | Tomato | mitochondrion | 12.7 | 22.96 |
| PGSC0003DMT400092385 | Potato | mitochondrion | 18.44 | 22.84 |
| Solyc06g054680.1.1 | Tomato | nucleus | 16.8 | 22.78 |
| KRH35627 | Soybean | mitochondrion | 22.95 | 22.67 |
| PGSC0003DMT400092448 | Potato | plastid | 20.9 | 22.67 |
| CDY28567 | Canola | mitochondrion, nucleus | 22.95 | 22.58 |
| CDY09205 | Canola | nucleus | 25.82 | 22.42 |
| CDY09204 | Canola | nucleus | 22.54 | 22.09 |
| Bra002480.1-P | Field mustard | nucleus | 25.0 | 21.86 |
| CDY31547 | Canola | nucleus | 25.0 | 21.86 |
| CDY61930 | Canola | nucleus | 25.0 | 21.86 |
| Bra011938.1-P | Field mustard | nucleus | 21.31 | 21.85 |
| CDY04574 | Canola | nucleus | 21.31 | 21.85 |
| Bra038225.1-P | Field mustard | nucleus | 23.36 | 21.84 |
| CDY31718 | Canola | nucleus | 21.31 | 21.76 |
| CDY24623 | Canola | nucleus | 25.0 | 21.55 |
| CDY46165 | Canola | nucleus | 25.0 | 21.55 |
| AT5G60440.1 | Thale cress | nucleus | 26.23 | 21.4 |
| Solyc01g060300.1.1 | Tomato | nucleus | 18.44 | 21.33 |
| PGSC0003DMT400094024 | Potato | golgi, mitochondrion | 15.98 | 21.31 |
| AT2G24840.1 | Thale cress | nucleus | 22.95 | 21.21 |
| Bra022434.1-P | Field mustard | nucleus | 24.59 | 21.2 |
| KRH32908 | Soybean | nucleus | 7.79 | 21.11 |
| AT4G36590.1 | Thale cress | nucleus | 21.31 | 20.97 |
| Bra020247.1-P | Field mustard | cytosol | 22.95 | 20.82 |
| Solyc03g034260.1.1 | Tomato | nucleus | 15.57 | 20.65 |
| CDY15761 | Canola | nucleus | 18.85 | 20.63 |
| PGSC0003DMT400095917 | Potato | cytosol | 11.07 | 20.45 |
| PGSC0003DMT400094043 | Potato | cytosol | 12.3 | 20.13 |
| Solyc03g007020.1.1 | Tomato | mitochondrion, nucleus, plastid | 17.62 | 20.0 |
| PGSC0003DMT400097360 | Potato | cytosol | 10.66 | 19.7 |
| PGSC0003DMT400027289 | Potato | cytosol | 9.84 | 18.6 |
| PGSC0003DMT400088010 | Potato | cytosol | 11.89 | 18.01 |
| PGSC0003DMT400089582 | Potato | cytosol | 11.89 | 18.01 |
| PGSC0003DMT400090655 | Potato | cytosol | 12.3 | 17.24 |
| PGSC0003DMT400097679 | Potato | cytosol | 9.02 | 17.19 |
| Solyc03g033930.1.1 | Tomato | cytosol | 6.97 | 17.0 |
| Bra020246.1-P | Field mustard | cytosol | 10.66 | 15.29 |
| PGSC0003DMT400086349 | Potato | cytosol, mitochondrion | 6.15 | 14.56 |
| Bra035685.1-P | Field mustard | nucleus | 17.21 | 14.33 |
| Bra020245.1-P | Field mustard | nucleus | 8.2 | 14.29 |
| CDY36150 | Canola | cytosol | 3.28 | 13.79 |
| CDY45604 | Canola | cytosol | 3.28 | 13.79 |
| PGSC0003DMT400086182 | Potato | cytosol | 6.97 | 13.28 |
| PGSC0003DMT400090145 | Potato | nucleus | 8.2 | 13.24 |
| PGSC0003DMT400092220 | Potato | cytosol | 6.56 | 12.5 |
| Bra022446.1-P | Field mustard | cytosol | 9.84 | 12.24 |
| Solyc06g065960.1.1 | Tomato | nucleus | 4.51 | 12.09 |
| CDY51695 | Canola | cytosol | 9.43 | 11.73 |
| CDX76788 | Canola | cytosol | 5.33 | 11.5 |
| CDY34751 | Canola | cytosol | 5.33 | 11.5 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr5G01940_001 | EnsemblPlants:GSMUA_Achr5P01940_001 |
| EnsemblPlants:GSMUA_Achr5T01940_001 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M0SUX3 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF164 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000295B4B2 | SEG:seg | : | : |
Description
Putative OsMADS78 - MADS-box family gene with M-alpha type-box [Source:GMGC_GENE;Acc:GSMUA_Achr5G01940_001]
Coordinates
chr5:+:1185873..1186607
Molecular Weight (calculated)
26810.1 Da
IEP (calculated)
9.354
GRAVY (calculated)
-0.458
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKGVTSQG RRKIEIKKIQ NEDARHVCFS KRKAGIFAKA SDISTLCGAD VALVVYSPAG NPYSFGSPAV DPVVDRFLSA SLIHGGSAHD VGRSHLTQQL
101: NQQYMEVSKQ LEASKARKMI LQERLAGVVQ SQEIEWAKNN IDHLGLEQLE RLKDAFERLK GRADARIQDI LGTGQRMALH QPQPPPPPPP SMMGFGVPPV
201: GAASSSTSYH PVWTFNTLQV PNQVEPDPYQ AQWLGSSMGY MHEP
101: NQQYMEVSKQ LEASKARKMI LQERLAGVVQ SQEIEWAKNN IDHLGLEQLE RLKDAFERLK GRADARIQDI LGTGQRMALH QPQPPPPPPP SMMGFGVPPV
201: GAASSSTSYH PVWTFNTLQV PNQVEPDPYQ AQWLGSSMGY MHEP
001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF
Arabidopsis Description
AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.