Factsheet for Bra002480.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009436.1-P
Bra009911.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra029469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60440.1	Bra009911.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra009911.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G60440.1	Bra009911.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra009911.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra009911.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020524.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020525.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020550.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020552.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra009911.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020524.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020525.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020550.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020552.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra029469.1-P	AT5G48670.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31547	Canola	nucleus	98.57	98.57
Solyc04g025050.1.1	Tomato	golgi, mitochondrion, nucleus, plastid	13.26	66.07
VIT_01s0010g01500.t01	Wine grape	nucleus	22.58	61.16
KRH22644	Soybean	nucleus	24.37	48.92
VIT_03s0088g00550.t01	Wine grape	nucleus	34.41	45.07
Bra026764.1-P	Field mustard	nucleus	26.52	44.05
VIT_03s0088g00600.t01	Wine grape	nucleus	33.33	43.46
PGSC0003DMT400013136	Potato	nucleus	30.47	43.15
Bra020247.1-P	Field mustard	cytosol	41.58	43.12
Bra032057.1-P	Field mustard	nucleus	27.6	42.78
Bra020242.1-P	Field mustard	nucleus	37.99	42.74
VIT_03s0088g00510.t01	Wine grape	nucleus	33.69	41.96
KRG91147	Soybean	nucleus	35.13	41.0
KRG91148	Soybean	nucleus	35.13	40.5
Bra038225.1-P	Field mustard	nucleus	37.28	39.85
AT5G60440.1	Thale cress	nucleus	42.65	39.8
KRH33030	Soybean	nucleus	15.77	38.94
Bra022434.1-P	Field mustard	nucleus	39.43	38.87
KRH32912	Soybean	nucleus	24.01	38.73
KRH35628	Soybean	nucleus	34.05	38.46
KRH32901	Soybean	nucleus	23.66	38.15
KRH32909	Soybean	nucleus	23.66	38.15
KRH32946	Soybean	nucleus	23.66	38.15
KRH72042	Soybean	extracellular	13.98	37.86
KRH32910	Soybean	nucleus	24.01	37.64
KRH32917	Soybean	nucleus	24.01	37.64
KRH32900	Soybean	nucleus	23.3	37.57
KRH32904	Soybean	nucleus	23.3	37.57
KRH32915	Soybean	nucleus	23.3	37.57
Bra020246.1-P	Field mustard	cytosol	22.58	37.06
KRG88448	Soybean	nucleus	22.94	36.99
KRH32916	Soybean	nucleus	22.94	36.99
Bra011938.1-P	Field mustard	nucleus	31.54	36.97
Bra020245.1-P	Field mustard	nucleus	18.28	36.43
KRH32873	Soybean	nucleus	27.6	35.48
Bra007829.1-P	Field mustard	nucleus	26.16	35.27
KRH72149	Soybean	mitochondrion	21.15	34.91
KRG91149	Soybean	mitochondrion	30.11	34.71
KRH71935	Soybean	nucleus	21.51	33.9
KRH28025	Soybean	nucleus	20.07	33.33
Bra021910.1-P	Field mustard	nucleus	21.51	32.97
KRH35627	Soybean	mitochondrion	29.03	32.79
KRH35629	Soybean	nucleus	24.37	32.23
Bra001209.1-P	Field mustard	nucleus	19.71	30.73
KRH72146	Soybean	nucleus	20.43	30.0
Bra022446.1-P	Field mustard	cytosol	20.07	28.57
GSMUA_Achr4P28260_001	Banana	nucleus	24.73	28.05
Bra035685.1-P	Field mustard	nucleus	28.67	27.3
GSMUA_Achr5P01940_001	Banana	nucleus	21.86	25.0
Bra026674.1-P	Field mustard	nucleus	17.92	24.27
Bra032347.1-P	Field mustard	nucleus	15.77	23.66
KRH32908	Soybean	nucleus	7.17	22.22
Bra003884.1-P	Field mustard	cytosol	16.49	21.7
GSMUA_Achr5P01990_001	Banana	nucleus	23.66	19.02

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra002480	EnsemblPlants:Bra002480.1	EnsemblPlants:Bra002480.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4CE49	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025440D6	SEG:seg	:	:

Description

AT5G60440 (E=1e-049) AGL62 | AGL62 (Agamous-like 62); DNA binding / transcription factor

Coordinates

chrA10:+:9292356..9293547

Molecular Weight (calculated)

32065.9 Da

IEP (calculated)

9.298

GRAVY (calculated)

-0.851

Length

279 amino acids

Sequence
(BLAST)

001: MAKKSKGRQR ITMAKMENES NLQVTFSKRR SGLFKKASEL NTLCGADIAI VVFSPGGKVY SFGHPSVEIV LNRFKNINQP TLNQNNNMRL NEARPNDAIR
101: VMNDFLTQVM NDLELAKKKN EELKKMRKNS KMPVNWWEDP VEELDLAHAK EFKSLLEKLK SYVTEEASKH FQAIFPQPNF YGGSSSGAPF RDGGYISPNL
201: DPSERRMFNM NAYYNQNMYP PNYPLPYGNN NYAGGFVPEY NLNYMHGFNQ YRNQNQNLSF KEEGISENEC HQDGPPPHL

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.