Factsheet for Bra020242.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009436.1-P
Bra009911.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra029469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60440.1	Bra009911.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra009911.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G60440.1	Bra009911.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra009911.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra009911.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020524.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020525.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020550.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020552.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra009911.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020524.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020525.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020550.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020552.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra029469.1-P	AT5G48670.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020245.1-P	Field mustard	nucleus	52.02	92.14
CDY71457	Canola	nucleus	45.56	91.13
CDY69485	Canola	nucleus	44.35	88.71
Bra020246.1-P	Field mustard	cytosol	53.23	77.65
Bra020247.1-P	Field mustard	cytosol	67.34	62.08
Solyc04g025050.1.1	Tomato	golgi, mitochondrion, nucleus, plastid	12.1	53.57
VIT_01s0010g01500.t01	Wine grape	nucleus	21.77	52.43
Bra026764.1-P	Field mustard	nucleus	28.23	41.67
VIT_03s0088g00600.t01	Wine grape	nucleus	34.68	40.19
VIT_03s0088g00550.t01	Wine grape	nucleus	34.27	39.91
VIT_03s0088g00510.t01	Wine grape	nucleus	35.48	39.29
Bra002480.1-P	Field mustard	nucleus	42.74	37.99
PGSC0003DMT400013136	Potato	nucleus	29.84	37.56
KRH22644	Soybean	nucleus	20.16	35.97
AT5G60440.1	Thale cress	nucleus	42.34	35.12
KRG91147	Soybean	nucleus	33.47	34.73
KRG91148	Soybean	nucleus	33.87	34.71
Bra022434.1-P	Field mustard	nucleus	39.52	34.63
Bra038225.1-P	Field mustard	nucleus	36.29	34.48
Bra032057.1-P	Field mustard	nucleus	25.0	34.44
KRH32946	Soybean	nucleus	23.39	33.53
KRH32900	Soybean	nucleus	22.98	32.95
KRH32915	Soybean	nucleus	22.98	32.95
KRH32912	Soybean	nucleus	22.98	32.95
KRH35628	Soybean	nucleus	32.66	32.79
KRH33030	Soybean	nucleus	14.92	32.74
KRH32917	Soybean	nucleus	23.39	32.58
KRH32909	Soybean	nucleus	22.58	32.37
KRH32901	Soybean	nucleus	22.58	32.37
KRH72042	Soybean	extracellular	13.31	32.04
KRH32910	Soybean	nucleus	22.98	32.02
KRH32904	Soybean	nucleus	22.18	31.79
KRH32916	Soybean	nucleus	22.18	31.79
KRG88448	Soybean	nucleus	21.77	31.21
Bra021910.1-P	Field mustard	nucleus	22.58	30.77
Bra011938.1-P	Field mustard	nucleus	29.44	30.67
KRH32873	Soybean	nucleus	26.61	30.41
KRH28025	Soybean	nucleus	20.16	29.76
Bra007829.1-P	Field mustard	nucleus	24.6	29.47
KRH71935	Soybean	nucleus	20.97	29.38
Bra001209.1-P	Field mustard	nucleus	20.97	29.05
KRH72149	Soybean	mitochondrion	19.76	28.99
KRH35629	Soybean	nucleus	24.19	28.44
Bra022446.1-P	Field mustard	cytosol	22.18	28.06
KRH35627	Soybean	mitochondrion	27.82	27.94
KRG91149	Soybean	mitochondrion	26.61	27.27
KRH72146	Soybean	nucleus	19.35	25.26
Bra032347.1-P	Field mustard	nucleus	17.74	23.66
GSMUA_Achr4P28260_001	Banana	nucleus	23.39	23.58
GSMUA_Achr5P01940_001	Banana	nucleus	22.98	23.36
KRH32908	Soybean	nucleus	8.47	23.33
Bra035685.1-P	Field mustard	nucleus	26.61	22.53
Bra003884.1-P	Field mustard	cytosol	16.13	18.87
Bra026674.1-P	Field mustard	nucleus	14.52	17.48
GSMUA_Achr5P01990_001	Banana	nucleus	23.79	17.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra020242	EnsemblPlants:Bra020242.1	EnsemblPlants:Bra020242.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879	UniProt:M4DUP9	InterPro:MADS_MEF2-like	PFAM:PF00319
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000254357D	SEG:seg	:	:

Description

AT5G60440 (E=7e-043) AGL62 | AGL62 (Agamous-like 62); DNA binding / transcription factor

Coordinates

chrA02:-:5825385..5826493

Molecular Weight (calculated)

28092.8 Da

IEP (calculated)

10.382

GRAVY (calculated)

-0.787

Length

248 amino acids

Sequence
(BLAST)

001: MRKTKGRLKT KMVKIEKEKN LQVTFCKRKN GLFKKANELC TLCNARVAII LFSPSGKIFS FGHTKVETII DRFKKTDHPD SNTQRNMQLG EIHQNSTIRG
101: LNNRLTEVMK NLESEQKTSE ELKKLRKKSK LPEIWLKESI GGLDLGQAKE FKGKLENLKK QVIYEAFKIF LATPFPHPGY YGGSSSNAPF GVDCNVNAFD
201: NHNMVLPNHP SPFVPGFNRN MALSSHPNPN ESGNEHPHDG HPPQPRSD

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.