Factsheet for Bra032057.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra002368.1-P
Bra006595.1-P
Bra009911.1-P
Bra018296.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra029469.1-P
Bra033467.1-P
Bra039723.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24840.1	Bra009911.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra020524.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra020525.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra020550.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra020552.1-P	AT1G31630.1	18713950
AT2G24840.1	Bra009911.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra020524.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra020525.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra020550.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra020552.1-P	AT1G65300.1	18713950
AT2G24840.1	Bra009911.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra020524.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra020525.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra020550.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra020552.1-P	AT1G65330.1	18713950
AT2G24840.1	Bra000214.1-P	AT2G41090.1	17360592
AT2G24840.1	Bra000214.1-P	AT2G41100.1	17360592
AT2G24840.1	Bra018296.1-P	AT3G51920.1	17360592
AT2G24840.1	Bra033467.1-P	AT3G51920.1	17360592
AT2G24840.1	Bra039723.1-P	AT4G14640.1	17360592
AT2G24840.1	Bra002368.1-P	AT5G21274.1	17360592
AT2G24840.1	Bra006595.1-P	AT5G21274.1	17360592
AT2G24840.1	Bra029469.1-P	AT5G48670.1	18599653
AT2G24840.1	Bra029469.1-P	AT5G48670.1	18713950

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45604	Canola	cytosol	31.67	98.28
CDY36150	Canola	cytosol	29.44	91.38
CDY36151	Canola	nucleus	43.33	88.64
Bra007829.1-P	Field mustard	nucleus	71.67	62.32
Bra026764.1-P	Field mustard	nucleus	48.33	51.79
AT2G24840.1	Thale cress	nucleus	72.78	49.62
CDX76788	Canola	cytosol	26.67	42.48
CDY34751	Canola	cytosol	26.11	41.59
PGSC0003DMT400094062	Potato	nucleus	44.44	39.22
VIT_03s0088g00590.t01	Wine grape	nucleus	45.56	38.32
KRG91150	Soybean	nucleus	47.78	38.05
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	46.67	38.01
KRH35626	Soybean	nucleus	46.67	37.17
VIT_03s0088g00610.t01	Wine grape	cytosol	38.33	31.51
Bra021910.1-P	Field mustard	nucleus	30.56	30.22
Bra001209.1-P	Field mustard	nucleus	30.0	30.17
Solyc04g025970.1.1	Tomato	cytosol, nucleus, peroxisome	18.33	28.21
Bra011938.1-P	Field mustard	nucleus	37.22	28.15
Bra038225.1-P	Field mustard	nucleus	40.56	27.97
Bra022434.1-P	Field mustard	nucleus	43.89	27.92
Bra002480.1-P	Field mustard	nucleus	42.78	27.6
Bra032347.1-P	Field mustard	nucleus	26.67	25.81
Bra020242.1-P	Field mustard	nucleus	34.44	25.0
Bra026674.1-P	Field mustard	nucleus	27.22	23.79
Bra020247.1-P	Field mustard	cytosol	33.89	22.68
Bra003884.1-P	Field mustard	cytosol	26.67	22.64
GSMUA_Achr5P01940_001	Banana	nucleus	30.56	22.54
GSMUA_Achr4P28260_001	Banana	nucleus	30.56	22.36
Bra035685.1-P	Field mustard	nucleus	32.78	20.14
GSMUA_Achr5P01990_001	Banana	nucleus	30.0	15.56
Bra022446.1-P	Field mustard	cytosol	16.11	14.8
Bra020246.1-P	Field mustard	cytosol	11.11	11.76
Bra020245.1-P	Field mustard	nucleus	7.78	10.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra032057	EnsemblPlants:Bra032057.1	EnsemblPlants:Bra032057.1-P	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	UniProt:M4ETC7	InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404
PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0002544D33	:	:	:	:

Description

AT2G24840 (E=9e-069) AGL61, DIA | AGL61 (AGAMOUS-LIKE 61); DNA binding / transcription factor

Coordinates

chrA04:+:11201630..11202172

Molecular Weight (calculated)

20505.2 Da

IEP (calculated)

10.634

GRAVY (calculated)

-0.474

Length

180 amino acids

Sequence
(BLAST)

001: MMSKKKETLG RQKIPMVRIK KETHRQVTFS KRRAGLFKKA SELCTLCGAE IGIIVYSPAK KPFSFGHPSV ESVLDRYLSR NNLSITQTEK PQGNAAASSG
101: VLNVELTQIV SQLEEEKKKG QAMADMRKAN AVRWSMTNWW ERPVEEMSMV QLREMKSALE ELWKIVVSET SMARQLGLRM

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.