Factsheet for Bra020247.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009436.1-P
Bra009911.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra029469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60440.1	Bra009911.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G31630.1	15805477
AT5G60440.1	Bra009911.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G31640.1	15805477
AT5G60440.1	Bra009436.1-P	AT1G46408.1	15805477
AT5G60440.1	Bra009911.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G65300.1	15805477
AT5G60440.1	Bra009911.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020524.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020525.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020550.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra020552.1-P	AT1G65330.1	15805477
AT5G60440.1	Bra009911.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020524.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020525.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020550.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra020552.1-P	AT5G26650.1	15805477
AT5G60440.1	Bra009911.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020524.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020525.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020550.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra020552.1-P	AT5G27960.1	15805477
AT5G60440.1	Bra029469.1-P	AT5G48670.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09205	Canola	nucleus	100.0	95.73
Bra020245.1-P	Field mustard	nucleus	36.43	70.0
Bra020246.1-P	Field mustard	cytosol	43.87	69.41
Bra020242.1-P	Field mustard	nucleus	62.08	67.34
Solyc04g025050.1.1	Tomato	golgi, mitochondrion, nucleus, plastid	13.01	62.5
VIT_01s0010g01500.t01	Wine grape	nucleus	20.45	53.4
Bra002480.1-P	Field mustard	nucleus	43.12	41.58
VIT_03s0088g00550.t01	Wine grape	nucleus	32.71	41.31
Bra038225.1-P	Field mustard	nucleus	39.41	40.61
PGSC0003DMT400013136	Potato	nucleus	29.74	40.61
VIT_03s0088g00600.t01	Wine grape	nucleus	31.6	39.72
Bra026764.1-P	Field mustard	nucleus	24.54	39.29
VIT_03s0088g00510.t01	Wine grape	nucleus	32.71	39.29
AT5G60440.1	Thale cress	nucleus	41.64	37.46
KRH22644	Soybean	nucleus	18.96	36.69
Bra022434.1-P	Field mustard	nucleus	38.29	36.4
KRG91147	Soybean	nucleus	31.6	35.56
KRG91148	Soybean	nucleus	31.97	35.54
KRH72042	Soybean	extracellular	13.38	34.95
KRH35628	Soybean	nucleus	31.97	34.82
Bra032057.1-P	Field mustard	nucleus	22.68	33.89
KRH32946	Soybean	nucleus	21.19	32.95
KRH32915	Soybean	nucleus	20.82	32.37
KRH32912	Soybean	nucleus	20.82	32.37
KRH32900	Soybean	nucleus	20.82	32.37
KRH32917	Soybean	nucleus	21.19	32.02
KRH32916	Soybean	nucleus	20.45	31.79
KRH32901	Soybean	nucleus	20.45	31.79
KRH32909	Soybean	nucleus	20.45	31.79
KRH32910	Soybean	nucleus	20.82	31.46
KRG91149	Soybean	mitochondrion	28.25	31.41
KRH32904	Soybean	nucleus	20.07	31.21
KRH33030	Soybean	nucleus	13.01	30.97
KRH35627	Soybean	mitochondrion	28.25	30.77
KRH72149	Soybean	mitochondrion	19.33	30.77
Bra011938.1-P	Field mustard	nucleus	27.14	30.67
KRG88448	Soybean	nucleus	19.7	30.64
Bra007829.1-P	Field mustard	nucleus	23.42	30.43
Bra022446.1-P	Field mustard	cytosol	21.93	30.1
KRH71935	Soybean	nucleus	19.33	29.38
KRH28025	Soybean	nucleus	18.22	29.17
Bra021910.1-P	Field mustard	nucleus	19.7	29.12
Bra001209.1-P	Field mustard	nucleus	19.33	29.05
KRH32873	Soybean	nucleus	23.42	29.03
KRH35629	Soybean	nucleus	21.93	27.96
Bra035685.1-P	Field mustard	nucleus	26.39	24.23
GSMUA_Achr4P28260_001	Banana	nucleus	21.56	23.58
KRH72146	Soybean	nucleus	16.36	23.16
GSMUA_Achr5P01940_001	Banana	nucleus	20.82	22.95
Bra032347.1-P	Field mustard	nucleus	13.38	19.35
KRH32908	Soybean	nucleus	6.32	18.89
GSMUA_Achr5P01990_001	Banana	nucleus	22.3	17.29
Bra026674.1-P	Field mustard	nucleus	13.01	16.99
Bra003884.1-P	Field mustard	cytosol	12.64	16.04

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra020247	EnsemblPlants:Bra020247.1	EnsemblPlants:Bra020247.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR036879	UniProt:M4DUQ4	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF185	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002543582
SEG:seg	:	:	:	:	:

Description

AT5G60440 (E=2e-063) AGL62 | AGL62 (Agamous-like 62); DNA binding / transcription factor

Coordinates

chrA02:-:5848808..5849854

Molecular Weight (calculated)

30641.1 Da

IEP (calculated)

6.350

GRAVY (calculated)

-0.848

Length

269 amino acids

Sequence
(BLAST)

001: MVKMDKENNL QVTFSKRKNG LFKKACELCT LCDAEVAIFV FSPSGKVYSF GHLDVETIIN RFEGIENPPL NPQPNMQLDE IHRNSPIQDL NNDLTELMNQ
101: LELEQKKTED LKNKRKNSKV PEIWLKDSIG GLDLGQAKEF KGKLENLKKQ VRYEAFKILQ GRYPHPSFYV GSSSNALFGV DGGININPNM NLFDQRRMVN
201: MNNFYNHNMA LPNHPLPFGN YGHAEGFVPG YNYIPEPNPT ENQNPSSKEE NEAGNEHHHD GHSPDPRSD

Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)

001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY

Arabidopsis Description

AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.