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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra009436.1-P
Bra009911.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra029469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G60440.1 Bra009911.1-P AT1G31630.1 15805477
AT5G60440.1 Bra020524.1-P AT1G31630.1 15805477
AT5G60440.1 Bra020525.1-P AT1G31630.1 15805477
AT5G60440.1 Bra020550.1-P AT1G31630.1 15805477
AT5G60440.1 Bra020552.1-P AT1G31630.1 15805477
AT5G60440.1 Bra009911.1-P AT1G31640.1 15805477
AT5G60440.1 Bra020524.1-P AT1G31640.1 15805477
AT5G60440.1 Bra020525.1-P AT1G31640.1 15805477
AT5G60440.1 Bra020550.1-P AT1G31640.1 15805477
AT5G60440.1 Bra020552.1-P AT1G31640.1 15805477
AT5G60440.1 Bra009436.1-P AT1G46408.1 15805477
AT5G60440.1 Bra009911.1-P AT1G65300.1 15805477
AT5G60440.1 Bra020524.1-P AT1G65300.1 15805477
AT5G60440.1 Bra020525.1-P AT1G65300.1 15805477
AT5G60440.1 Bra020550.1-P AT1G65300.1 15805477
AT5G60440.1 Bra020552.1-P AT1G65300.1 15805477
AT5G60440.1 Bra009911.1-P AT1G65330.1 15805477
AT5G60440.1 Bra020524.1-P AT1G65330.1 15805477
AT5G60440.1 Bra020525.1-P AT1G65330.1 15805477
AT5G60440.1 Bra020550.1-P AT1G65330.1 15805477
AT5G60440.1 Bra020552.1-P AT1G65330.1 15805477
AT5G60440.1 Bra009911.1-P AT5G26650.1 15805477
AT5G60440.1 Bra020524.1-P AT5G26650.1 15805477
AT5G60440.1 Bra020525.1-P AT5G26650.1 15805477
AT5G60440.1 Bra020550.1-P AT5G26650.1 15805477
AT5G60440.1 Bra020552.1-P AT5G26650.1 15805477
AT5G60440.1 Bra009911.1-P AT5G27960.1 15805477
AT5G60440.1 Bra020524.1-P AT5G27960.1 15805477
AT5G60440.1 Bra020525.1-P AT5G27960.1 15805477
AT5G60440.1 Bra020550.1-P AT5G27960.1 15805477
AT5G60440.1 Bra020552.1-P AT5G27960.1 15805477
AT5G60440.1 Bra029469.1-P AT5G48670.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra020245.1-P Field mustard nucleus 64.71 78.57
CDY28567 Canola mitochondrion, nucleus 79.41 54.44
Bra020242.1-P Field mustard nucleus 77.65 53.23
Bra020247.1-P Field mustard cytosol 69.41 43.87
Bra022446.1-P Field mustard cytosol 31.18 27.04
Bra002480.1-P Field mustard nucleus 37.06 22.58
Bra038225.1-P Field mustard nucleus 30.59 19.92
AT5G60440.1 Thale cress nucleus 32.35 18.39
Bra022434.1-P Field mustard nucleus 30.0 18.02
VIT_03s0088g00510.t01 Wine grape nucleus 22.35 16.96
VIT_03s0088g00550.t01 Wine grape nucleus 21.18 16.9
PGSC0003DMT400013136 Potato nucleus 18.82 16.24
Bra026764.1-P Field mustard nucleus 15.88 16.07
VIT_03s0088g00600.t01 Wine grape nucleus 20.0 15.89
KRH32908 Soybean nucleus 8.24 15.56
KRH35629 Soybean nucleus 18.82 15.17
KRG91148 Soybean nucleus 21.18 14.88
Bra011938.1-P Field mustard nucleus 20.0 14.29
KRG91147 Soybean nucleus 20.0 14.23
KRH35628 Soybean nucleus 20.0 13.77
Bra021910.1-P Field mustard nucleus 13.53 12.64
KRH32873 Soybean nucleus 15.29 11.98
KRH28025 Soybean nucleus 11.76 11.9
Bra032057.1-P Field mustard nucleus 11.76 11.11
KRH72146 Soybean nucleus 12.35 11.05
KRG91149 Soybean mitochondrion 15.29 10.74
GSMUA_Achr5P01940_001 Banana nucleus 15.29 10.66
KRH72149 Soybean mitochondrion 10.59 10.65
KRH35627 Soybean mitochondrion 15.29 10.53
GSMUA_Achr4P28260_001 Banana nucleus 14.71 10.16
Bra007829.1-P Field mustard nucleus 12.35 10.14
KRH32917 Soybean nucleus 10.59 10.11
Bra001209.1-P Field mustard nucleus 10.59 10.06
Bra035685.1-P Field mustard nucleus 17.06 9.9
KRH32909 Soybean nucleus 10.0 9.83
KRH32912 Soybean nucleus 10.0 9.83
KRH32915 Soybean nucleus 10.0 9.83
KRH32916 Soybean nucleus 10.0 9.83
KRH32946 Soybean nucleus 10.0 9.83
KRH32900 Soybean nucleus 10.0 9.83
KRH32904 Soybean nucleus 10.0 9.83
KRH32901 Soybean nucleus 10.0 9.83
KRH72042 Soybean extracellular 5.88 9.71
KRH32910 Soybean nucleus 10.0 9.55
KRG88448 Soybean nucleus 9.41 9.25
KRH71935 Soybean nucleus 9.41 9.04
GSMUA_Achr5P01990_001 Banana nucleus 17.65 8.65
KRH22644 Soybean nucleus 5.29 6.47
Bra032347.1-P Field mustard nucleus 6.47 5.91
VIT_01s0010g01500.t01 Wine grape nucleus 3.53 5.83
KRH33030 Soybean nucleus 2.35 3.54
Bra026674.1-P Field mustard nucleus 4.12 3.4
Bra003884.1-P Field mustard cytosol 3.53 2.83
Solyc04g025050.1.1 Tomato golgi, mitochondrion, nucleus, plastid 0.0 0.0
Protein Annotations
EnsemblPlants:Bra020246.1EnsemblPlants:Bra020246.1-PEnsemblPlantsGene:Bra020246ncoils:CoilSEG:segUniParc:UPI0002543581
UniProt:M4DUQ3MapMan:35.1::::
Description
AT5G60440 (E=2e-028) AGL62 | AGL62 (Agamous-like 62); DNA binding / transcription factor
Coordinates
chrA02:-:5841168..5842846
Molecular Weight (calculated)
19145.0 Da
IEP (calculated)
9.493
GRAVY (calculated)
-0.627
Length
170 amino acids
Sequence
(BLAST)
001: MQLGEIHQNS TIRGLNNRLT EVMKNVESEQ KTNEELKKLR KKSKLPEIWL KESIGGLDLG QAKEFKGKLE NLKKQVIYEA FKIFLATPFP HPGFYGGSSC
101: NTPFGVDGGI NIDPNLNPFE QRRMVNVNAF GNHNMVLPDH PSPFGNYSRV EGFVPGFNHN MALPCHPNPK
Best Arabidopsis Sequence Match ( AT5G60440.1 )
(BLAST)
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.