Factsheet for Bra035685.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009911.1-P
Bra020524.1-P
Bra020525.1-P
Bra020550.1-P
Bra020552.1-P
Bra039404.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01530.1	Bra009911.1-P	AT1G31630.1	15805477
AT1G01530.1	Bra020524.1-P	AT1G31630.1	15805477
AT1G01530.1	Bra020525.1-P	AT1G31630.1	15805477
AT1G01530.1	Bra020550.1-P	AT1G31630.1	15805477
AT1G01530.1	Bra020552.1-P	AT1G31630.1	15805477
AT1G01530.1	Bra009911.1-P	AT1G65300.1	15805477
AT1G01530.1	Bra020524.1-P	AT1G65300.1	15805477
AT1G01530.1	Bra020525.1-P	AT1G65300.1	15805477
AT1G01530.1	Bra020550.1-P	AT1G65300.1	15805477
AT1G01530.1	Bra020552.1-P	AT1G65300.1	15805477
AT1G01530.1	Bra009911.1-P	AT1G65330.1	15805477
AT1G01530.1	Bra020524.1-P	AT1G65330.1	15805477
AT1G01530.1	Bra020525.1-P	AT1G65330.1	15805477
AT1G01530.1	Bra020550.1-P	AT1G65330.1	15805477
AT1G01530.1	Bra020552.1-P	AT1G65330.1	15805477
AT1G01530.1	Bra009911.1-P	AT5G26650.1	15805477
AT1G01530.1	Bra020524.1-P	AT5G26650.1	15805477
AT1G01530.1	Bra020525.1-P	AT5G26650.1	15805477
AT1G01530.1	Bra020550.1-P	AT5G26650.1	15805477
AT1G01530.1	Bra020552.1-P	AT5G26650.1	15805477
AT1G65360.1	Bra009911.1-P	AT1G31630.1	15805477
AT1G65360.1	Bra020524.1-P	AT1G31630.1	15805477
AT1G65360.1	Bra020525.1-P	AT1G31630.1	15805477
AT1G65360.1	Bra020550.1-P	AT1G31630.1	15805477
AT1G65360.1	Bra020552.1-P	AT1G31630.1	15805477
AT1G65360.1	Bra009911.1-P	AT1G31640.1	15805477
AT1G65360.1	Bra020524.1-P	AT1G31640.1	15805477
AT1G65360.1	Bra020525.1-P	AT1G31640.1	15805477
AT1G65360.1	Bra020550.1-P	AT1G31640.1	15805477
AT1G65360.1	Bra020552.1-P	AT1G31640.1	15805477
AT4G36590.1	Bra009911.1-P	AT1G31630.1	15805477
AT4G36590.1	Bra020524.1-P	AT1G31630.1	15805477
AT4G36590.1	Bra020525.1-P	AT1G31630.1	15805477
AT4G36590.1	Bra020550.1-P	AT1G31630.1	15805477
AT4G36590.1	Bra020552.1-P	AT1G31630.1	15805477
AT4G36590.1	Bra009911.1-P	AT1G65300.1	15805477
AT4G36590.1	Bra020524.1-P	AT1G65300.1	15805477
AT4G36590.1	Bra020525.1-P	AT1G65300.1	15805477
AT4G36590.1	Bra020550.1-P	AT1G65300.1	15805477
AT4G36590.1	Bra020552.1-P	AT1G65300.1	15805477
AT4G36590.1	Bra009911.1-P	AT1G65330.1	15805477
AT4G36590.1	Bra020524.1-P	AT1G65330.1	15805477
AT4G36590.1	Bra020525.1-P	AT1G65330.1	15805477
AT4G36590.1	Bra020550.1-P	AT1G65330.1	15805477
AT4G36590.1	Bra020552.1-P	AT1G65330.1	15805477
AT4G36590.1	Bra039404.1-P	AT3G05860.1	15805477
AT4G36590.1	Bra009911.1-P	AT5G27960.1	15805477
AT4G36590.1	Bra020524.1-P	AT5G27960.1	15805477
AT4G36590.1	Bra020525.1-P	AT5G27960.1	15805477
AT4G36590.1	Bra020550.1-P	AT5G27960.1	15805477
AT4G36590.1	Bra020552.1-P	AT5G27960.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31718	Canola	nucleus	69.28	84.94
Solyc04g025050.1.1	Tomato	golgi, mitochondrion, nucleus, plastid	10.58	55.36
Bra011938.1-P	Field mustard	nucleus	42.66	52.52
VIT_01s0010g01500.t01	Wine grape	nucleus	14.68	41.75
PGSC0003DMT400013136	Potato	nucleus	24.91	37.06
Bra026764.1-P	Field mustard	nucleus	20.48	35.71
KRH22644	Soybean	nucleus	16.38	34.53
VIT_03s0088g00550.t01	Wine grape	nucleus	24.23	33.33
Bra032057.1-P	Field mustard	nucleus	20.14	32.78
AT4G36590.1	Thale cress	nucleus	27.3	32.26
VIT_03s0088g00600.t01	Wine grape	nucleus	23.55	32.24
VIT_03s0088g00510.t01	Wine grape	nucleus	24.57	32.14
Bra007829.1-P	Field mustard	nucleus	21.84	30.92
KRH32915	Soybean	nucleus	17.06	28.9
KRH32901	Soybean	nucleus	17.06	28.9
Bra002480.1-P	Field mustard	nucleus	27.3	28.67
KRH32917	Soybean	nucleus	17.41	28.65
Bra022434.1-P	Field mustard	nucleus	27.65	28.62
KRG91148	Soybean	nucleus	23.55	28.51
KRH35627	Soybean	mitochondrion	23.89	28.34
KRG88448	Soybean	nucleus	16.72	28.32
KRH32912	Soybean	nucleus	16.72	28.32
KRH32909	Soybean	nucleus	16.72	28.32
KRH32946	Soybean	nucleus	16.72	28.32
KRG91149	Soybean	mitochondrion	23.21	28.1
Bra038225.1-P	Field mustard	nucleus	24.91	27.97
KRH32916	Soybean	nucleus	16.38	27.75
KRH32904	Soybean	nucleus	16.38	27.75
KRG91147	Soybean	nucleus	22.53	27.62
KRH32910	Soybean	nucleus	16.72	27.53
AT1G65360.1	Thale cress	nucleus	21.16	27.43
KRH72149	Soybean	mitochondrion	15.7	27.22
KRH32900	Soybean	nucleus	16.04	27.17
KRH35628	Soybean	nucleus	22.87	27.13
Bra020242.1-P	Field mustard	nucleus	22.53	26.61
Bra020247.1-P	Field mustard	cytosol	24.23	26.39
KRH72042	Soybean	extracellular	9.22	26.21
Bra021910.1-P	Field mustard	nucleus	16.04	25.82
KRH33030	Soybean	nucleus	9.56	24.78
AT1G01530.1	Thale cress	nucleus	20.82	24.7
KRH32873	Soybean	nucleus	17.75	23.96
KRH71935	Soybean	nucleus	13.99	23.16
Bra001209.1-P	Field mustard	nucleus	13.65	22.35
KRH28025	Soybean	nucleus	12.29	21.43
GSMUA_Achr4P28260_001	Banana	nucleus	16.04	19.11
Bra022446.1-P	Field mustard	cytosol	12.29	18.37
KRH35629	Soybean	nucleus	12.63	17.54
Bra026674.1-P	Field mustard	nucleus	12.29	17.48
KRH72146	Soybean	nucleus	11.26	17.37
GSMUA_Achr5P01940_001	Banana	nucleus	14.33	17.21
Bra032347.1-P	Field mustard	nucleus	10.92	17.2
Bra020245.1-P	Field mustard	nucleus	8.19	17.14
Bra020246.1-P	Field mustard	cytosol	9.9	17.06
Bra003884.1-P	Field mustard	cytosol	11.95	16.51
GSMUA_Achr5P01990_001	Banana	nucleus	16.38	13.83
KRH32908	Soybean	nucleus	3.75	12.22

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra035685	EnsemblPlants:Bra035685.1	EnsemblPlants:Bra035685.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M4F3N5	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002544037	SEG:seg

Description

AT5G60440 (E=1e-031) AGL62 | AGL62 (Agamous-like 62); DNA binding / transcription factor

Coordinates

chrA04:+:12849102..12853100

Molecular Weight (calculated)

32837.2 Da

IEP (calculated)

9.010

GRAVY (calculated)

-0.416

Length

293 amino acids

Sequence
(BLAST)

001: MEKDSDLQVT YSKRRQGLFK KATELCTLCG VEIGILVFSP GRKVFSFGNP DVRYVFNRFK SYDQNPFQLN EFGPSVTIRG LNSILSQELV KLEKEQARRT
101: ILEKIRIQRE ETDKWWEKPP SELNLRQNTC LISVLENLRM DLGSPRFQQA MVPQNYCGGS NNNIVGGGNT DPLDERSMFE NAFNYNPNMM IPNQGPTLGY
201: NNIKPESGGC SDCLSIRFLD SVDLSVRLVR PRFSWEGGWT SISEEVDAKR VTSVSKGSAI SRGAGGGVIV WRAMGSSGNS RSVAFIKVLN LLN

Best Arabidopsis Sequence Match ( AT4G36590.1 )
(BLAST)

001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS

Arabidopsis Description

MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.