Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G65360.1 | Thale cress | nucleus | 62.75 | 68.58 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 14.17 | 62.5 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 21.86 | 52.43 |
| KRH22644 | Soybean | nucleus | 22.27 | 39.57 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 32.79 | 38.03 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 32.39 | 37.38 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 32.79 | 36.16 |
| PGSC0003DMT400013136 | Potato | nucleus | 28.34 | 35.53 |
| KRG91148 | Soybean | nucleus | 33.2 | 33.88 |
| KRG91147 | Soybean | nucleus | 32.39 | 33.47 |
| KRH28025 | Soybean | nucleus | 21.86 | 32.14 |
| KRH35628 | Soybean | nucleus | 31.98 | 31.98 |
| KRH33030 | Soybean | nucleus | 14.57 | 31.86 |
| AT2G34440.1 | Thale cress | nucleus | 21.86 | 31.4 |
| KRH72042 | Soybean | extracellular | 12.96 | 31.07 |
| AT4G36590.1 | Thale cress | nucleus | 30.36 | 30.24 |
| KRH72149 | Soybean | mitochondrion | 20.65 | 30.18 |
| AT5G60440.1 | Thale cress | nucleus | 36.44 | 30.1 |
| KRH32946 | Soybean | nucleus | 21.05 | 30.06 |
| KRH32916 | Soybean | nucleus | 21.05 | 30.06 |
| KRH32912 | Soybean | nucleus | 21.05 | 30.06 |
| KRH32900 | Soybean | nucleus | 21.05 | 30.06 |
| KRH32917 | Soybean | nucleus | 21.46 | 29.78 |
| KRH32909 | Soybean | nucleus | 20.65 | 29.48 |
| KRH32901 | Soybean | nucleus | 20.65 | 29.48 |
| Bra011938.1-P | Field mustard | nucleus | 28.34 | 29.41 |
| KRH32910 | Soybean | nucleus | 21.05 | 29.21 |
| KRH32873 | Soybean | nucleus | 25.51 | 29.03 |
| CDY04574 | Canola | nucleus | 27.94 | 28.99 |
| KRH32904 | Soybean | nucleus | 20.24 | 28.9 |
| KRH32915 | Soybean | nucleus | 20.24 | 28.9 |
| AT3G66656.1 | Thale cress | nucleus | 20.65 | 28.65 |
| KRG88448 | Soybean | nucleus | 19.84 | 28.32 |
| CDY31718 | Canola | nucleus | 27.13 | 28.03 |
| CDY15761 | Canola | nucleus | 25.1 | 27.8 |
| KRH71935 | Soybean | nucleus | 19.84 | 27.68 |
| KRG91149 | Soybean | mitochondrion | 26.32 | 26.86 |
| AT2G24840.1 | Thale cress | nucleus | 28.34 | 26.52 |
| KRH72146 | Soybean | nucleus | 20.24 | 26.32 |
| KRH35627 | Soybean | mitochondrion | 25.91 | 25.91 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 24.7 | 25.0 |
| KRH35629 | Soybean | nucleus | 21.05 | 24.64 |
| AT1G29962.1 | Thale cress | nucleus | 16.6 | 22.16 |
| AT1G72350.1 | Thale cress | nucleus | 19.84 | 21.88 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 21.05 | 21.14 |
| AT1G28460.1 | Thale cress | nucleus | 15.38 | 20.88 |
| Bra035685.1-P | Field mustard | nucleus | 24.7 | 20.82 |
| AT1G54760.1 | Thale cress | nucleus | 13.36 | 20.5 |
| AT1G17310.2 | Thale cress | nucleus | 18.62 | 20.18 |
| AT1G28450.1 | Thale cress | nucleus | 14.98 | 20.0 |
| KRH32908 | Soybean | nucleus | 6.07 | 16.67 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 20.24 | 14.41 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:837142 | UniProt:A0A178WE04 | ProteinID:AAF81311.1 | EMBL:AB493420 |
| ProteinID:AEE27300.1 | Symbol:AGL28 | ArrayExpress:AT1G01530 | EnsemblPlantsGene:AT1G01530 | RefSeq:AT1G01530 | TAIR:AT1G01530 |
| RefSeq:AT1G01530-TAIR-G | EnsemblPlants:AT1G01530.1 | TAIR:AT1G01530.1 | EMBL:AY141231 | ProteinID:CAA73304.1 | ncoils:Coil |
| EMBL:DQ446218 | EMBL:DQ652819 | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009911 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| RefSeq:NP_171660.1 | ProteinID:OAP15272.1 | PFAM:PF00319 | PO:PO:0000036 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005660 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009089 | PO:PO:0020090 | PRINTS:PR00404 |
| PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | UniProt:Q9LMM8 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000A1AB4 | SEG:seg | : | : |
Description
AGL28AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04]
Coordinates
chr1:-:192634..193670
Molecular Weight (calculated)
28031.1 Da
IEP (calculated)
9.815
GRAVY (calculated)
-0.731
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKNLGRRK IELVKMTNES NLQVTFSKRR SGLFKKGSEL CTLCDAEIAI IVFSPSGKAY SFGHPNVNKL LDHSLGRVIR HNNTNFAESR TKLRIQMLNE
101: SLTEVMAEKE KEQETKQSIV QNERENKDAE KWWRNSPTEL NLAQSTSMKC DLEALKKEVD EKVAQLHHRN LNFYVGSSSN VAAPAAVSGG NISTNHGFFD
201: QNGNSTSAPT LPFGFNVMNR TPAGYNSYQL QNQEVKQVHP QYWARYY
101: SLTEVMAEKE KEQETKQSIV QNERENKDAE KWWRNSPTEL NLAQSTSMKC DLEALKKEVD EKVAQLHHRN LNFYVGSSSN VAAPAAVSGG NISTNHGFFD
201: QNGNSTSAPT LPFGFNVMNR TPAGYNSYQL QNQEVKQVHP QYWARYY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.