Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0060g00300.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60440.1 | VIT_14s0060g00300.t01 | AT5G48670.1 | 15805477 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 40.65 | 84.47 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 79.44 | 79.81 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 77.1 | 73.66 |
| VIT_01s0010g01530.t01 | Wine grape | nucleus | 65.89 | 72.68 |
| VIT_03s0088g00590.t01 | Wine grape | nucleus | 51.87 | 51.87 |
| PGSC0003DMT400013136 | Potato | nucleus | 47.66 | 51.78 |
| Solyc01g106720.1.1 | Tomato | nucleus | 50.93 | 51.66 |
| CDY71457 | Canola | nucleus | 29.91 | 51.61 |
| CDY69485 | Canola | nucleus | 29.91 | 51.61 |
| KRH22644 | Soybean | nucleus | 32.71 | 50.36 |
| VIT_03s0088g00610.t01 | Wine grape | cytosol | 46.73 | 45.66 |
| KRG91148 | Soybean | nucleus | 50.47 | 44.63 |
| KRH32912 | Soybean | nucleus | 35.98 | 44.51 |
| KRH32901 | Soybean | nucleus | 35.98 | 44.51 |
| KRH32946 | Soybean | nucleus | 35.98 | 44.51 |
| KRH32909 | Soybean | nucleus | 35.51 | 43.93 |
| KRG91147 | Soybean | nucleus | 48.6 | 43.51 |
| KRH32900 | Soybean | nucleus | 35.05 | 43.35 |
| KRH32904 | Soybean | nucleus | 35.05 | 43.35 |
| KRH32915 | Soybean | nucleus | 35.05 | 43.35 |
| KRH32917 | Soybean | nucleus | 35.98 | 43.26 |
| KRH32910 | Soybean | nucleus | 35.98 | 43.26 |
| KRG88448 | Soybean | nucleus | 34.58 | 42.77 |
| KRH32916 | Soybean | nucleus | 34.58 | 42.77 |
| KRH35628 | Soybean | nucleus | 48.6 | 42.11 |
| KRH71935 | Soybean | nucleus | 32.24 | 38.98 |
| KRH72042 | Soybean | extracellular | 18.69 | 38.84 |
| VIT_00s0386g00010.t01 | Wine grape | nucleus | 36.45 | 38.42 |
| KRH72149 | Soybean | mitochondrion | 29.91 | 37.87 |
| KRH28025 | Soybean | nucleus | 28.97 | 36.9 |
| KRH32873 | Soybean | nucleus | 36.45 | 35.94 |
| KRH35627 | Soybean | mitochondrion | 41.12 | 35.63 |
| CDY09199 | Canola | nucleus | 41.12 | 35.48 |
| CDY24623 | Canola | nucleus | 46.73 | 35.34 |
| CDY42198 | Canola | nucleus | 45.33 | 35.14 |
| CDX95426 | Canola | nucleus | 45.33 | 35.14 |
| CDY28567 | Canola | mitochondrion, nucleus | 40.19 | 34.68 |
| Bra020242.1-P | Field mustard | nucleus | 40.19 | 34.68 |
| CDY09204 | Canola | nucleus | 40.19 | 34.54 |
| AT1G65360.1 | Thale cress | nucleus | 36.45 | 34.51 |
| KRH32908 | Soybean | nucleus | 14.49 | 34.44 |
| Bra022434.1-P | Field mustard | nucleus | 45.33 | 34.28 |
| Bra038225.1-P | Field mustard | nucleus | 41.59 | 34.1 |
| KRG91149 | Soybean | mitochondrion | 38.32 | 33.88 |
| KRH33030 | Soybean | nucleus | 17.76 | 33.63 |
| CDY46165 | Canola | nucleus | 44.39 | 33.57 |
| AT5G60440.1 | Thale cress | nucleus | 46.73 | 33.44 |
| Bra002480.1-P | Field mustard | nucleus | 43.46 | 33.33 |
| CDY31547 | Canola | nucleus | 42.99 | 32.97 |
| Bra011938.1-P | Field mustard | nucleus | 36.45 | 32.77 |
| CDY04574 | Canola | nucleus | 36.45 | 32.77 |
| CDY09205 | Canola | nucleus | 42.99 | 32.74 |
| AT4G36590.1 | Thale cress | nucleus | 37.85 | 32.66 |
| AT1G01530.1 | Thale cress | nucleus | 37.38 | 32.39 |
| VIT_10s0003g03970.t01 | Wine grape | nucleus | 31.78 | 32.38 |
| VIT_07s0005g06590.t01 | Wine grape | nucleus | 31.78 | 32.38 |
| CDY61930 | Canola | nucleus | 42.06 | 32.26 |
| Bra020247.1-P | Field mustard | cytosol | 39.72 | 31.6 |
| CDY15761 | Canola | nucleus | 32.71 | 31.39 |
| CDY31718 | Canola | nucleus | 35.05 | 31.38 |
| KRH72146 | Soybean | nucleus | 27.1 | 30.53 |
| KRH35629 | Soybean | nucleus | 29.44 | 29.86 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 28.97 | 25.2 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 28.04 | 24.59 |
| Bra035685.1-P | Field mustard | nucleus | 32.24 | 23.55 |
| Bra022446.1-P | Field mustard | cytosol | 20.09 | 21.94 |
| CDY51695 | Canola | cytosol | 20.09 | 21.94 |
| Bra020246.1-P | Field mustard | cytosol | 15.89 | 20.0 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 31.31 | 19.31 |
| Bra020245.1-P | Field mustard | nucleus | 12.15 | 18.57 |
Protein Annotations
| EntrezGene:100248056 | wikigene:100248056 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:CBI25111 | ProteinID:CBI25111.3 |
| ncoils:Coil | UniProt:D7T3N0 | EMBL:FN595512 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| EntrezGene:LOC100248056 | wikigene:LOC100248056 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI0001982F26 | ArrayExpress:VIT_03s0088g00600 | EnsemblPlantsGene:VIT_03s0088g00600 | EnsemblPlants:VIT_03s0088g00600.t01 | RefSeq:XP_002270922 | RefSeq:XP_002270922.1 |
Description
No Description!
Coordinates
chr3:+:8793246..8793890
Molecular Weight (calculated)
24213.4 Da
IEP (calculated)
9.796
GRAVY (calculated)
-0.379
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVRKSKGR QKVEMTKMTK ESNLQVTFSK RRSGLFKKAS ELCTLCGAET AIIVFSPGKK LYSFGHPCVE SIIDRFLMRN PLPNSGALQL FEAHRTTNVR
101: NLNVQLTQVV NQLEGEKKRG EALTQMWKAC KPQCWWAAPI EEFSLEQLEL LKVSLEDLRR KVARQADELM IEAKNPPAFF PGNSVGTIMP YDAQMAGFDP
201: YSHKYNFGYG GPFL
101: NLNVQLTQVV NQLEGEKKRG EALTQMWKAC KPQCWWAAPI EEFSLEQLEL LKVSLEDLRR KVARQADELM IEAKNPPAFF PGNSVGTIMP YDAQMAGFDP
201: YSHKYNFGYG GPFL
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.