Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31547 | Canola | nucleus | 96.77 | 96.77 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 12.54 | 62.5 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 21.51 | 58.25 |
| CDY36151 | Canola | nucleus | 16.49 | 52.27 |
| KRH22644 | Soybean | nucleus | 24.01 | 48.2 |
| CDY71457 | Canola | nucleus | 20.79 | 46.77 |
| CDY69485 | Canola | nucleus | 20.79 | 46.77 |
| CDY09205 | Canola | nucleus | 44.09 | 43.77 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 33.33 | 43.66 |
| PGSC0003DMT400013136 | Potato | nucleus | 30.82 | 43.65 |
| CDY09199 | Canola | nucleus | 38.35 | 43.15 |
| CDY09204 | Canola | nucleus | 37.99 | 42.57 |
| CDY28567 | Canola | mitochondrion, nucleus | 37.63 | 42.34 |
| CDY55987 | Canola | nucleus | 25.45 | 42.26 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 32.26 | 42.06 |
| CDX81713 | Canola | nucleus | 24.37 | 41.98 |
| KRG91147 | Soybean | nucleus | 35.84 | 41.84 |
| CDX95426 | Canola | nucleus | 40.5 | 40.94 |
| KRG91148 | Soybean | nucleus | 35.48 | 40.91 |
| KRH33030 | Soybean | nucleus | 16.49 | 40.71 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 32.62 | 40.62 |
| CDY42198 | Canola | nucleus | 40.14 | 40.58 |
| CDY24623 | Canola | nucleus | 40.86 | 40.28 |
| AT5G60440.1 | Thale cress | nucleus | 43.01 | 40.13 |
| CDY46165 | Canola | nucleus | 39.43 | 38.87 |
| KRH72042 | Soybean | extracellular | 14.34 | 38.84 |
| KRH35628 | Soybean | nucleus | 34.05 | 38.46 |
| KRH32912 | Soybean | nucleus | 23.3 | 37.57 |
| CDY04574 | Canola | nucleus | 31.9 | 37.4 |
| KRH32917 | Soybean | nucleus | 23.66 | 37.08 |
| KRH32901 | Soybean | nucleus | 22.94 | 36.99 |
| KRH32909 | Soybean | nucleus | 22.94 | 36.99 |
| KRH32946 | Soybean | nucleus | 22.94 | 36.99 |
| KRH32910 | Soybean | nucleus | 23.3 | 36.52 |
| KRH32915 | Soybean | nucleus | 22.58 | 36.42 |
| KRH32900 | Soybean | nucleus | 22.58 | 36.42 |
| KRH32904 | Soybean | nucleus | 22.58 | 36.42 |
| CDY31718 | Canola | nucleus | 31.18 | 36.4 |
| KRH32873 | Soybean | nucleus | 27.96 | 35.94 |
| KRH32916 | Soybean | nucleus | 22.22 | 35.84 |
| KRG88448 | Soybean | nucleus | 22.22 | 35.84 |
| KRG91149 | Soybean | mitochondrion | 30.11 | 34.71 |
| CDY15761 | Canola | nucleus | 27.6 | 34.53 |
| KRH71935 | Soybean | nucleus | 21.86 | 34.46 |
| KRH28025 | Soybean | nucleus | 20.43 | 33.93 |
| KRH72149 | Soybean | mitochondrion | 20.07 | 33.14 |
| KRH35629 | Soybean | nucleus | 24.37 | 32.23 |
| KRH35627 | Soybean | mitochondrion | 28.32 | 31.98 |
| CDX74094 | Canola | nucleus | 19.35 | 30.17 |
| CDY57614 | Canola | nucleus | 19.35 | 30.17 |
| KRH72146 | Soybean | nucleus | 20.43 | 30.0 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 25.09 | 28.46 |
| CDY51695 | Canola | cytosol | 19.71 | 28.06 |
| CDY45604 | Canola | cytosol | 5.73 | 27.59 |
| CDY36150 | Canola | cytosol | 5.38 | 25.86 |
| CDY21751 | Canola | nucleus | 18.64 | 25.24 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 21.86 | 25.0 |
| CDX81816 | Canola | nucleus | 17.92 | 24.27 |
| CDX99867 | Canola | nucleus | 16.85 | 24.23 |
| CDY26304 | Canola | nucleus | 15.41 | 23.24 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 16.13 | 21.23 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 16.13 | 21.23 |
| CDX72908 | Canola | nucleus | 16.13 | 21.13 |
| KRH32908 | Soybean | nucleus | 6.81 | 21.11 |
| CDX76788 | Canola | cytosol | 8.24 | 20.35 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 24.37 | 19.6 |
| CDY34751 | Canola | cytosol | 7.89 | 19.47 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078JBW0 | UniProt:A0A078JBW0 | EnsemblPlants:CDY61930 | ProteinID:CDY61930 |
| ProteinID:CDY61930.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00034591001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EB1BFF | SEG:seg |
Description
BnaCnng38710DBnaCnng38710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBW0]
Coordinates
chrLK034062:-:1224..2412
Molecular Weight (calculated)
32058.8 Da
IEP (calculated)
9.298
GRAVY (calculated)
-0.868
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKSKGRQR ITMAKMENES NLQVTFSKRR SGLFKKASEL NTLCGADIAV VVFSPGGKVY SFGHPNVENV LNRFKNINQP PLNQNNNMRF NEARPNDAIR
101: VMNDFLTQVM NDLELAKKKN EELKKIRKNS KMPVNWWEDP VEELDLAHAK EFKGLLEKLK SYVTDEASKH FQAIFPQPNF YGGSSSGAPF RDGGYINPNL
201: DPSERRMFNV NAYYNQNMYP PNYPLPYGNN NYAGGFVPEY SLNYMHGFNQ YRNQNQNLNF KEEGISENEC HQDGLPPHL
101: VMNDFLTQVM NDLELAKKKN EELKKIRKNS KMPVNWWEDP VEELDLAHAK EFKGLLEKLK SYVTDEASKH FQAIFPQPNF YGGSSSGAPF RDGGYINPNL
201: DPSERRMFNV NAYYNQNMYP PNYPLPYGNN NYAGGFVPEY SLNYMHGFNQ YRNQNQNLNF KEEGISENEC HQDGLPPHL
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
Arabidopsis Description
MADS-box protein [Source:UniProtKB/TrEMBL;Acc:O23222]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.