CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026764.1-P	Field mustard	nucleus	100.0	100.0
CDX81713	Canola	nucleus	93.45	96.91
CDY36151	Canola	nucleus	33.33	63.64
CDY71457	Canola	nucleus	28.57	38.71
CDY69485	Canola	nucleus	28.57	38.71
CDY45604	Canola	cytosol	11.9	34.48
PGSC0003DMT400094816	Potato	golgi, nucleus, plastid	44.05	33.48
CDY36150	Canola	cytosol	11.31	32.76
VIT_03s0088g00590.t01	Wine grape	nucleus	41.67	32.71
KRH35626	Soybean	nucleus	43.45	32.3
PGSC0003DMT400094062	Potato	nucleus	38.69	31.86
KRG91150	Soybean	nucleus	42.86	31.86
VIT_03s0088g00610.t01	Wine grape	cytosol	38.1	29.22
CDY57614	Canola	nucleus	29.76	27.93
CDX74094	Canola	nucleus	29.76	27.93
CDY09199	Canola	nucleus	41.07	27.82
CDY34751	Canola	cytosol	18.45	27.43
CDY28567	Canola	mitochondrion, nucleus	40.48	27.42
CDY09204	Canola	nucleus	40.48	27.31
CDX76788	Canola	cytosol	17.86	26.55
CDY31547	Canola	nucleus	44.05	26.52
CDY46165	Canola	nucleus	44.05	26.15
CDY15761	Canola	nucleus	34.52	26.01
CDY24623	Canola	nucleus	43.45	25.8
CDY61930	Canola	nucleus	42.26	25.45
CDY31718	Canola	nucleus	35.71	25.1
CDY04574	Canola	nucleus	35.12	24.79
CDX95426	Canola	nucleus	39.88	24.28
CDY42198	Canola	nucleus	39.29	23.91
CDY09205	Canola	nucleus	39.29	23.49
CDX99867	Canola	nucleus	24.4	21.13
CDY26304	Canola	nucleus	22.62	20.54
GSMUA_Achr5P01940_001	Banana	nucleus	29.76	20.49
CDX81816	Canola	nucleus	23.21	18.93
CDX72908	Canola	nucleus	23.81	18.78
GSMUA_Achr4P28260_001	Banana	nucleus	27.38	18.7
CDY21751	Canola	nucleus	22.62	18.45
CDY50644	Canola	cytosol, mitochondrion, nucleus	21.43	16.98
CDX68270	Canola	cytosol, nucleus, plastid	21.43	16.98
CDY51695	Canola	cytosol	16.67	14.29
GSMUA_Achr5P01990_001	Banana	nucleus	28.57	13.83

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078IZF9	UniProt:A0A078IZF9	EnsemblPlants:CDY55987	ProteinID:CDY55987
ProteinID:CDY55987.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00017641001	InterPro:IPR002100	InterPro:IPR036879
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF185
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002542CC2	SEG:seg

Description

BnaA09g56830DBnaA09g56830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZF9]

Coordinates

chrLK033445:+:39516..40022

Molecular Weight (calculated)

19236.2 Da

IEP (calculated)

9.734

GRAVY (calculated)

-0.506

Length

168 amino acids

Sequence
(BLAST)

001: MAKIEKESHR QVAFSKRRAG LFKKASELCT LCGVEVAIIV FSPAKKPFSF GHPSVYSVLD RYRNNTSFQQ QSQPRENTAT RSELSLVLSQ LEEEKKKGEE
101: MRKASEMAKW SVDEMSLLQL QEMRYALEEL RKTMVVPPPS YMNSMSTGFS CIYNSSYVHA SSRVTYKL

Best Arabidopsis Sequence Match ( AT2G24840.1 )
(BLAST)

001: MYVTKYKNKL PTLQVDLIIM PHQTQACIYK QTLSLHQIFQ QRKATKTLHT KKTMMSKKKE SIGRQKIPMV KIKKESHRQV TFSKRRAGLF KKASELCTLC
101: GAEIGIIVFS PAKKPFSFGH PSVESVLDRY VSRNNMSLAQ SQQLQGSPAA SCELNMQLTH ILSEVEEEKK KGQAMEEMRK ESVRRSMINW WEKPVEEMNM
201: VQLQEMKYAL EELRKTVVTN MASFNEAKDD VFGFLDNKVT VPPYVNMPSG PSNIYNFANG NGCF

Arabidopsis Description

AGL61Agamous-like MADS-box protein AGL61 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.