Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28567 | Canola | mitochondrion, nucleus | 97.19 | 97.58 |
| CDY09199 | Canola | nucleus | 94.38 | 94.76 |
| CDY71457 | Canola | nucleus | 45.38 | 91.13 |
| CDY69485 | Canola | nucleus | 44.18 | 88.71 |
| CDY09205 | Canola | nucleus | 69.88 | 61.92 |
| Solyc04g025050.1.1 | Tomato | golgi, mitochondrion, nucleus, plastid | 12.05 | 53.57 |
| VIT_01s0010g01500.t01 | Wine grape | nucleus | 21.69 | 52.43 |
| CDY36151 | Canola | nucleus | 17.67 | 50.0 |
| CDX81713 | Canola | nucleus | 26.91 | 41.36 |
| CDY55987 | Canola | nucleus | 27.31 | 40.48 |
| VIT_03s0088g00600.t01 | Wine grape | nucleus | 34.54 | 40.19 |
| VIT_03s0088g00550.t01 | Wine grape | nucleus | 34.14 | 39.91 |
| VIT_03s0088g00510.t01 | Wine grape | nucleus | 35.34 | 39.29 |
| CDY31547 | Canola | nucleus | 42.97 | 38.35 |
| CDY61930 | Canola | nucleus | 42.57 | 37.99 |
| PGSC0003DMT400013136 | Potato | nucleus | 29.32 | 37.06 |
| CDY24623 | Canola | nucleus | 41.37 | 36.4 |
| CDY42198 | Canola | nucleus | 39.36 | 35.51 |
| KRH22644 | Soybean | nucleus | 19.68 | 35.25 |
| CDX95426 | Canola | nucleus | 38.96 | 35.14 |
| AT5G60440.1 | Thale cress | nucleus | 42.17 | 35.12 |
| KRG91147 | Soybean | nucleus | 33.33 | 34.73 |
| KRG91148 | Soybean | nucleus | 33.73 | 34.71 |
| CDY46165 | Canola | nucleus | 38.96 | 34.28 |
| KRH32946 | Soybean | nucleus | 23.29 | 33.53 |
| KRH32900 | Soybean | nucleus | 22.89 | 32.95 |
| KRH32912 | Soybean | nucleus | 22.89 | 32.95 |
| KRH32915 | Soybean | nucleus | 22.89 | 32.95 |
| KRH35628 | Soybean | nucleus | 32.53 | 32.79 |
| KRH33030 | Soybean | nucleus | 14.86 | 32.74 |
| KRH32917 | Soybean | nucleus | 23.29 | 32.58 |
| KRH32909 | Soybean | nucleus | 22.49 | 32.37 |
| KRH32901 | Soybean | nucleus | 22.49 | 32.37 |
| KRH72042 | Soybean | extracellular | 13.25 | 32.04 |
| KRH32910 | Soybean | nucleus | 22.89 | 32.02 |
| KRH32916 | Soybean | nucleus | 22.09 | 31.79 |
| KRH32904 | Soybean | nucleus | 22.09 | 31.79 |
| KRG88448 | Soybean | nucleus | 21.69 | 31.21 |
| CDY15761 | Canola | nucleus | 27.71 | 30.94 |
| KRH32873 | Soybean | nucleus | 26.91 | 30.88 |
| CDY04574 | Canola | nucleus | 28.51 | 29.83 |
| CDX74094 | Canola | nucleus | 21.29 | 29.61 |
| CDY57614 | Canola | nucleus | 21.29 | 29.61 |
| KRH71935 | Soybean | nucleus | 20.88 | 29.38 |
| KRH72149 | Soybean | mitochondrion | 19.68 | 28.99 |
| CDY51695 | Canola | cytosol | 22.49 | 28.57 |
| KRH28025 | Soybean | nucleus | 19.28 | 28.57 |
| CDY31718 | Canola | nucleus | 27.31 | 28.45 |
| KRH35629 | Soybean | nucleus | 23.69 | 27.96 |
| KRH35627 | Soybean | mitochondrion | 27.71 | 27.94 |
| KRG91149 | Soybean | mitochondrion | 26.51 | 27.27 |
| KRH72146 | Soybean | nucleus | 18.88 | 24.74 |
| CDX99867 | Canola | nucleus | 18.88 | 24.23 |
| CDY26304 | Canola | nucleus | 17.27 | 23.24 |
| GSMUA_Achr4P28260_001 | Banana | nucleus | 22.49 | 22.76 |
| GSMUA_Achr5P01940_001 | Banana | nucleus | 22.09 | 22.54 |
| KRH32908 | Soybean | nucleus | 8.03 | 22.22 |
| CDX72908 | Canola | nucleus | 16.47 | 19.25 |
| CDY50644 | Canola | cytosol, mitochondrion, nucleus | 16.06 | 18.87 |
| CDX68270 | Canola | cytosol, nucleus, plastid | 16.06 | 18.87 |
| CDX81816 | Canola | nucleus | 15.26 | 18.45 |
| CDY21751 | Canola | nucleus | 14.86 | 17.96 |
| CDX76788 | Canola | cytosol | 8.03 | 17.7 |
| GSMUA_Achr5P01990_001 | Banana | nucleus | 24.5 | 17.58 |
| CDY45604 | Canola | cytosol | 4.02 | 17.24 |
| CDY34751 | Canola | cytosol | 7.63 | 16.81 |
| CDY36150 | Canola | cytosol | 3.61 | 15.52 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078F844 | UniProt:A0A078F844 | EnsemblPlants:CDY09204 | ProteinID:CDY09204 |
| ProteinID:CDY09204.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00001450001 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF185 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEC674 | SEG:seg |
Description
BnaA02g06300DBnaA02g06300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F844]
Coordinates
chrLK031993:-:720374..721698
Molecular Weight (calculated)
27942.5 Da
IEP (calculated)
10.288
GRAVY (calculated)
-0.793
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKTKGRLKT KMVKIEKEKN LQVTFCKRKN GLFKKANELC TLCNARVAII LFSPSGKIFS FGHTKVETII DRFKKTDHPD SNTQSNMQLG EIHQNSTIRG
101: LNNRLTEVMK NVESEQKTNE ELKKLRKKSK LPEIWLKESI GGLDLGQAKE FKGKLENLKK QVIYEAFKSF LATPFPHPGF YGGSSSNAPC GGVDGNVNAF
201: DNHNMVLSNH PSPFVPGFNH NMALPSHPNP NESGNEHPHD GHPPQPRSD
101: LNNRLTEVMK NVESEQKTNE ELKKLRKKSK LPEIWLKESI GGLDLGQAKE FKGKLENLKK QVIYEAFKSF LATPFPHPGF YGGSSSNAPC GGVDGNVNAF
201: DNHNMVLSNH PSPFVPGFNH NMALPSHPNP NESGNEHPHD GHPPQPRSD
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
Arabidopsis Description
AGL62Agamous-like MADS-box protein AGL62 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.